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Protein Alignment dyl and Col6a3

DIOPT Version :9

Sequence 1:	NP_647890.2	Gene:	dyl / 38531	FlyBaseID:	FBgn0066365	Length:	611	Species:	Drosophila melanogaster
Sequence 2:	NP_001229937.1	Gene:	Col6a3 / 12835	MGIID:	88461	Length:	3284	Species:	Mus musculus

Alignment Length:	304	Identity:	73/304 - (24%)
Similarity:	103/304 - (33%)	Gaps:	63/304 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly   344 GPGLPGGEYGLPQIGANGLSEEYGPPEAYERNDFALGGPGVLPPAAYPDPRHPASDA-------- 400
            |||.||.|      |..|.....|||.       .:|.||::.....|.||.....|
Mouse  2211 GPGQPGFE------GEQGTRGSQGPPG-------PIGPPGLIGEQGIPGPRGGGGTAGAPGERGR 2262

  Fly   401 TGAYSENQPDVVPSPQAQTSAAVPTADSGT-------VSGPASSQSPQ-----PQPTGS-NELGL 452
            ||..........|.|:.......|..::|.       ..|....:..:     |.|.|: .|.|.
Mouse  2263 TGPLGRKGEPGEPGPKGSIGNRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGTPGEPGA 2327

  Fly   453 PPPPLP-------GQSGQYSTVKRKDDLSAGGNLVSLGGRPRSVEGLDDLRGVRRR----RDTMD 506
            ..||.|       |.||......:|.|....|.....|.|..||:....::.:|.:    ...::
Mouse  2328 DGPPGPKGIRGRRGNSGPPGATGQKGDPGYPGPSGHKGNRGDSVDQCALIQSIRDKCPCCYGPLE 2392

  Fly   507 IVVKPQRI-YKRNAQE-MTDVNTSRIIQVV--APGDVNFALNSNA-----------SNE-TVVIQ 555
            ..|.|..: :..:..| :|....||:.:|:  ..||:..| .||.           :|| |..|:
Mouse  2393 CPVFPTELAFALDTSEGVTQDTFSRMREVLLGIVGDLTIA-ESNCPRGARVAVVTYNNEVTTEIR 2456

  Fly   556 SARSADAETICMSVPSFVGGLVMLLLVLAVA-SLVAAFLFVRVR 598
            .|.|.....:..|:.:....|......|..| |.||...|.|||
Mouse  2457 FADSKKKSALLDSIQNLQVALTSKQQSLETAMSFVARNTFKRVR 2500

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.