DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dyl and col12a1a

DIOPT Version :9

Sequence 1:NP_647890.2 Gene:dyl / 38531 FlyBaseID:FBgn0066365 Length:611 Species:Drosophila melanogaster
Sequence 2:XP_009291571.1 Gene:col12a1a / 100149543 ZFINID:ZDB-GENE-090728-1 Length:3112 Species:Danio rerio


Alignment Length:230 Identity:50/230 - (21%)
Similarity:74/230 - (32%) Gaps:54/230 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 CPEPKCGPGLPGGEYGLPQI-------------------GANGLSEEYGPPEAYERNDFAL-GGP 382
            |.:...||..|.|..|.|..                   |..||..:.|||.....|..:| |.|
Zfish  2745 CAQDSVGPPGPAGPQGSPGTKGPRGERGESGPTGPMGPRGEQGLPGQMGPPGPQGPNGLSLPGEP 2809

  Fly   383 GVLPPAAYPDPRHPASDATGAYSENQPDVVPSPQAQTSAAVPTADSGTVS--GPASSQSPQPQPT 445
            |      .|.|:....|:.          :|..:....||.|....|...  ||..|:.|.....
Zfish  2810 G------RPGPKGDPGDSG----------LPGQRGPVGAAGPLGPVGPAGARGPPGSEGPSGPRG 2858

  Fly   446 GSNELGLPPPPLPGQSGQYSTVKRKDDLSAGGNLVSLGGRPRSVEGLDDLRGVRRRRDTMDIVVK 510
            .|..:|  ||..||..|......:..|....|        |..::|....||....::.|     
Zfish  2859 PSGPMG--PPGAPGMPGITGKPGKPGDTGFPG--------PVGMKGEKGERGDTASQNMM----- 2908

  Fly   511 PQRIYKRNAQEMTDVNTSRIIQVVAPGDVNFALNS 545
             :.:.::..:::.....|||..::.....|:..||
Zfish  2909 -RSVARQVCEQLVSRQMSRIDMMMNQIPSNYRSNS 2942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dylNP_647890.2 ZP 90..345 CDD:214579 1/6 (17%)
PHA03378 <339..494 CDD:223065 40/176 (23%)
col12a1aXP_009291571.1 fn3 26..103 CDD:278470
vWA_collagen_alphaI-XII-like 134..297 CDD:238759
fn3 331..410 CDD:278470
vWA_collagen_alphaI-XII-like 434..597 CDD:238759
FN3 629..716 CDD:238020
FN3 721..807 CDD:238020
fn3 812..890 CDD:278470
fn3 902..981 CDD:278470
FN3 995..1069 CDD:238020
fn3 1084..1163 CDD:278470
vWA_collagen_alphaI-XII-like 1195..1358 CDD:238759
fn3 1387..1464 CDD:278470
fn3 1475..1556 CDD:278470
FN3 1565..1643 CDD:214495
fn3 1656..1727 CDD:278470
fn3 1754..1830 CDD:278470
fn3 1844..1923 CDD:278470
fn3 1935..2012 CDD:278470
fn3 2025..2105 CDD:278470
FN3 2118..2192 CDD:238020
fn3 2206..2283 CDD:278470
vWA_collagen_alphaI-XII-like 2323..2487 CDD:238759
TSPN 2521..2715 CDD:214560
Collagen 2766..2845 CDD:189968 19/94 (20%)
Collagen 2813..2895 CDD:189968 21/101 (21%)
Collagen 2960..>2994 CDD:189968
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.