DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and RBP45A

DIOPT Version :9

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_568815.1 Gene:RBP45A / 835581 AraportID:AT5G54900 Length:387 Species:Arabidopsis thaliana


Alignment Length:443 Identity:81/443 - (18%)
Similarity:141/443 - (31%) Gaps:169/443 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GRGGQEYSNDDDPPMSRLFIICNKAHTEEDF-REAFSPYGEIEDIWVVKDKHTQENKGIAYVKFS 76
            |.|.|...:..|  :..|:|...:...:|:: ...|:..||.....|:::|.|.:::|..:::|.
plant    47 GIGSQNPGSASD--VKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFV 109

  Fly    77 KTSDAAKAQEEMNGKTIGKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFI--VIPKTATEEDIR 139
            ..|.|.:..:..||..:...::|.: |..|....|..:.:.|...:. :|:  :.|: .|:..:.
plant   110 SHSVAERVLQTYNGAPMPSTEQTFR-LNWAQAGAGEKRFQTEGPDHT-IFVGDLAPE-VTDYMLS 171

  Fly   140 EEFSQ-WGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRTQRD 203
            :.|.. :|.|:...:|.::..|..||:|:|||                                 
plant   172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF--------------------------------- 203

  Fly   204 QYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQNNDMAAFLRMQNVPVAQPSC 268
                                                      ..:|..|.|...|..        
plant   204 ------------------------------------------ADENEQMRAMTEMNG-------- 218

  Fly   269 LEVNVSNCVNQDQLWRLFDIIPGLDYCQI--MREHGPRTNEALVVYDNPEAAIYAKDKLHGLEYP 331
                                    .||..  || .||..|               |:.|     |
plant   219 ------------------------QYCSTRPMR-IGPAAN---------------KNAL-----P 238

  Fly   332 MGERIIVKVNGMSSARMDTSFIDKRTKKDAICNVPLPPTQPLASPDDQVAQRLFI-VLSANLPHS 395
            |...:.....|.:                             |..:|.....:|: .|.||:...
plant   239 MQPAMYQNTQGAN-----------------------------AGDNDPNNTTIFVGGLDANVTDD 274

  Fly   396 ILKNIFSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKV 448
            .||:||..:..|:.|.:.|.|.||:|:||...||:.|:..|||.::.|..|::
plant   275 ELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRL 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 17/80 (21%)
RRM2_RBM45 122..195 CDD:240813 14/75 (19%)
RRM3_RBM45 267..339 CDD:240814 11/73 (15%)
RRM4_RBM45 383..449 CDD:240815 25/67 (37%)
RBP45ANP_568815.1 RRM1_SECp43_like 61..138 CDD:409780 17/77 (22%)
RRM2_SECp43_like 153..232 CDD:409781 24/188 (13%)
RRM3_NGR1_NAM8_like 259..330 CDD:409782 25/69 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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