DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and ATRBP45C

DIOPT Version :10

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_567764.1 Gene:ATRBP45C / 828808 AraportID:AT4G27000 Length:415 Species:Arabidopsis thaliana


Alignment Length:233 Identity:54/233 - (23%)
Similarity:92/233 - (39%) Gaps:48/233 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TEEDFREAF-SPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKV 102
            |:....|.| :.|..::...||.|:.|..:||..:|:|:..|:..:|..||||:...  .|.::.
plant   185 TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCS--SRPMRT 247

  Fly   103 LVAANR-----------NQGSNKSENEQEKYVRLFIVIPKTATEEDIREEFSQWGDVESVTIVKE 156
            ..|||:           |...|..|::..........:.::.||:|::..|.|:|::..|.|...
plant   248 GPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG 312

  Fly   157 KNNGNPKGFGYVRFTKFYYAAVAFENCSA---------KYKAVFAEPKGSTRTQRDQ-------- 204
            |..|         |.::...|.|.:..|.         ..:..:.....:.:||.||        
plant   313 KRCG---------FVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGG 368

  Fly   205 -YGRPSEDNPLYSSSGRG----NSNFNGGGSSSGGGGS 237
             ||.|.:.   |.:.|..    :.|...||.:.||.|:
plant   369 YYGYPPQG---YEAYGYAPPPQDPNAYYGGYAGGGYGN 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:409801 19/66 (29%)
RRM_SF 122..195 CDD:473069 14/81 (17%)
RRM3_RBM45 267..339 CDD:409803
RRM4_RBM45 383..449 CDD:409804
ATRBP45CNP_567764.1 RRM1_SECp43_like 81..158 CDD:409780
RRM2_SECp43_like 172..251 CDD:409781 19/67 (28%)
RRM_SF 277..348 CDD:473069 14/79 (18%)
Blue background indicates that the domain is not in the aligned region.

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