Protein Alignment CG1316 and pabpc1a

DIOPT Version :9

• Sequence 1: NP_647887.1
• Gene: CG1316 / 38526
• FlyBaseID: FBgn0035526
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_001026846.1
• Gene: pabpc1a / 606498
• ZFINID: ZDB-GENE-030131-3238
• Length: 634
• Species: Danio rerio
• Alignment Length: 429
• Identity: 90/429 - (20%)
• Similarity: 152/429 - (35%)
• Gaps: 117/429 - (27%)

  Fly    26 PMSRLFIICNKAH---TEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEE 87
            ||:.|::  ...|   ||....|.|||.|.|..|.|.:|..|:.:.|.|||.|.:.:||.:|.:.
Zfish     9 PMASLYV--GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71

  Fly    88 MNGKTI-GKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFIV-IPKTATEEDIREEFSQWGDVES 150
            ||...| |:..|    ::.:.|:....||     ....:||. :.|:...:.:.:.||.:|::.|
Zfish    72 MNFDVIKGRPVR----IMWSQRDPSLRKS-----GVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127

  Fly   151 VTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSA------------------------------ 185
            ..:|.::|..  ||:|:|.|.....|..|.|..:.
Zfish   128 CKVVCDENGS--KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEF 190

  Fly   186 ---------------KYKAVFAE--PKGSTRTQRDQYGRPSEDNPLYSSSGRGNSNF-------- 225
                           |.|.:|.:  |..|.|...|..|:         |.|.|..:|
Zfish   191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGK---------SKGFGFVSFERHEDAQR 246

  Fly   226 ----------NG-----GGSSSGGGGSNSYNNDWNVSQNNDMAAFLRMQNVPVAQPSCLEVNVSN 275
                      ||     |.:...|.........:...:.:.|.   |.|.|     :....|:.:
Zfish   247 AVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMT---RYQGV-----NLYVKNLDD 303

  Fly   276 CVNQDQLWRLFDIIPGLDYCQIMREHGPRTNEALVVYDNPEAAIYAKDKLHG-------LEYPMG 333
            .::.::|.:.|.....:...::|.|.|.......|.:.:||.|..|..:::|       |...:.
Zfish   304 GLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368

  Fly   334 ERIIVKVNGMSSARMDTSFIDKRTKKDAICNVPLPPTQP 372
            :|     .....|.:.:.::.:.....|:.|..|.|.||
Zfish   369 QR-----KEERQAHLTSQYMQRMASVRAVPNPVLNPYQP 402

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:240812	29/82 (35%)
		RRM2_RBM45	122..195	CDD:240813	20/120 (17%)
		RRM3_RBM45	267..339	CDD:240814	14/78 (18%)
		RRM4_RBM45	383..449	CDD:240815
pabpc1a	NP_001026846.1	PABP-1234	11..614	CDD:130689	88/427 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910