DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and RBM23

DIOPT Version :9

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_024305408.1 Gene:RBM23 / 55147 HGNCID:20155 Length:515 Species:Homo sapiens


Alignment Length:202 Identity:47/202 - (23%)
Similarity:95/202 - (47%) Gaps:29/202 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YRSQSRSGGGRGGQEYS---NDDDP---PMSRL--------FIICNKAHTE---EDFREAFSPYG 51
            |||...:.|.|.|...|   .:..|   |:..|        .:.|.:....   .|..:.||..|
Human   170 YRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVG 234

  Fly    52 EIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVAAN---RNQGSN 113
            ::.|:.::.|::::.:||||||:|.:......|......:.:|     :.::|.|:   :|:.:.
Human   235 KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG-----VPIIVQASQAEKNRLAA 294

  Fly   114 KSENEQEKY---VRLFI-VIPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFY 174
            .:.|.|:..   :||:: .:....||:.:|..|..:|.::::.::|:.:.|..||:|::.|:...
Human   295 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 359

  Fly   175 YAAVAFE 181
            .|..|.|
Human   360 CARRALE 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 19/93 (20%)
RRM2_RBM45 122..195 CDD:240813 16/64 (25%)
RRM3_RBM45 267..339 CDD:240814
RRM4_RBM45 383..449 CDD:240815
RBM23XP_024305408.1 RRM 143..514 CDD:330708 47/202 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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