DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG1316 and sf3b4

DIOPT Version :9

Sequence 1:	NP_647887.1	Gene:	CG1316 / 38526	FlyBaseID:	FBgn0035526	Length:	470	Species:	Drosophila melanogaster
Sequence 2:	NP_989116.1	Gene:	sf3b4 / 394721	XenbaseID:	XB-GENE-492933	Length:	388	Species:	Xenopus tropicalis

Alignment Length:	197	Identity:	51/197 - (25%)
Similarity:	90/197 - (45%)	Gaps:	32/197 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    45 EAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNG-KTIGKMDRTLKVLVAANR 108
            |.|...|.:.:..:.||:.|.:::|..:|:|....||..|.:.||. |..||..|..|. .|.|:
Frog    31 ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKA-SAHNK 94

  Fly   109 N--QGSNKSENEQEKYVRLFI-VIPKTATEEDIREEFSQWGDV-ESVTIVKEKNNGNPKGFGYVR 169
            |  .|:|           :|| .:.....|:.:.:.||.:|.: ::..|:::.:.||.||:.::.
Frog    95 NLDVGAN-----------IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 148

  Fly   170 FTKFYYAAVAFENCSAKY------KAVFAEPKGSTRTQRDQYGRPSE-----DNPLYSSSGRGNS 223
            |..|..:..|.|..:.:|      ...:|..|.|   :.:::|..:|     .||| |.:.|.:.
Frog   149 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS---KGERHGSAAERLLAAQNPL-SQADRPHQ 209

  Fly   224 NF 225
            .|
Frog   210 LF 211

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:240812	19/60 (32%)
		RRM2_RBM45	122..195	CDD:240813	17/80 (21%)
		RRM3_RBM45	267..339	CDD:240814
		RRM4_RBM45	383..449	CDD:240815
sf3b4	NP_989116.1	RRM1_SF3B4	15..88	CDD:240780	18/56 (32%)
sf3b4	NP_989116.1	RRM2_SF3B4	99..181	CDD:240781	19/92 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910