Protein Alignment CG1316 and lark

DIOPT Version :9

• Sequence 1: NP_647887.1
• Gene: CG1316 / 38526
• FlyBaseID: FBgn0035526
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Alignment Length: 237
• Identity: 55/237 - (23%)
• Similarity: 85/237 - (35%)
• Gaps: 53/237 - (22%)

  Fly    29 RLFI--ICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGK 91
            :|||  :..|....| .|..|..||.:.:..|||      |.|  :|..........|.:.:||.
  Fly     8 KLFIGNLDEKTQATE-LRALFEKYGTVVECDVVK------NYG--FVHMETEQQGRDAIQNLNGY 63

  Fly    92 TIGKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFI--VIPKTATEEDIREEFSQWGDVESVTIV 154
            |:.:.  .:||..|.:|...:..:       .::|:  :..||...| :||.|.::|.|....||
  Fly    64 TLNEF--AIKVEAAKSRRAPNTPT-------TKIFVGNLTDKTRAPE-VRELFQKYGTVVECDIV 118

  Fly   155 KEKNNGNPKGFGYV-----------------RFTKFYYAAVAFENCSAKYKAVFAEPKGSTRTQR 202
                    :.:|:|                 |........|.......:.|....:|:...|..|
  Fly   119 --------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGR 175

  Fly   203 DQYGRPSEDNP-LYSSSGRGNSNFNGGGSSSGGGGSNSYNND 243
            .  |..|::.| ||.|:|.|..  .....|:||.....|..|
  Fly   176 S--GHWSKECPRLYGSAGGGRE--PPSPLSAGGYRDRMYGRD 213

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:240812	21/77 (27%)
		RRM2_RBM45	122..195	CDD:240813	16/91 (18%)
		RRM3_RBM45	267..339	CDD:240814
		RRM4_RBM45	383..449	CDD:240815
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	20/75 (27%)
		RRM1_2_CoAA_like	87..152	CDD:409779	14/73 (19%)
		hnRNP-R-Q	<88..>258	CDD:273732	32/139 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439658
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840