DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and hfp

DIOPT Version :10

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_525123.2 Gene:hfp / 38173 FlyBaseID:FBgn0028577 Length:637 Species:Drosophila melanogaster


Alignment Length:149 Identity:42/149 - (28%)
Similarity:78/149 - (52%) Gaps:7/149 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 MSRLFIICNKAHTEED-FREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNG 90
            |.|:::.......:|| .|.||:|:|.|:.|.:..|..||::||.|:|::.....|..|.|:|||
  Fly   129 MCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNG 193

  Fly    91 KTIGKMDRTLKVLVAANRNQGS---NKSENEQEKYVRLFIV-IPKTATEEDIREEFSQWGDVESV 151
            ..:|  .|.:||...:|..|..   ::.:.|.:.:.|:::. |....:||||:..|..:|.:...
  Fly   194 ALMG--GRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYC 256

  Fly   152 TIVKEKNNGNPKGFGYVRF 170
            .:.:..:....||:|::.:
  Fly   257 KLAQGTSLHTHKGYGFIEY 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:409801 28/78 (36%)
RRM_SF 122..195 CDD:473069 11/50 (22%)
RRM3_RBM45 267..339 CDD:409803
RRM4_RBM45 383..449 CDD:409804
hfpNP_525123.2 half-pint 10..637 CDD:130706 42/149 (28%)
Blue background indicates that the domain is not in the aligned region.

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