Protein Alignment CG1316 and ssx

DIOPT Version :10

• Sequence 1: NP_647887.1
• Gene: CG1316 / 38526
• FlyBaseID: FBgn0035526
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 282
• Identity: 63/282 - (22%)
• Similarity: 116/282 - (41%)
• Gaps: 56/282 - (19%)

  Fly     7 QSRSGGGRG--GQEYSNDDDPPMSR-----------------------LFIICN---KAHTEEDF 43
            |....||.|  |||:|.|::...|:                       ..:|.|   :..|:.:.
  Fly    45 QENGDGGNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDREL 109

  Fly    44 REAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVAANR 108
            ...||..|.|....:::|..|..:.|..:|.:...||:..|.:::||..:  .::.|||..|...
  Fly   110 YNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYV--RNKRLKVSYARPG 172

  Fly   109 NQGSNKSENEQEKYVRLFIV-IPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTK 172
            .| |.|..|       |::: :.:...::.:...||.:|.:....|:::|..|.|:|..:||:.|
  Fly   173 GQ-SIKDTN-------LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNK 229

  Fly   173 FYYAAVAFENCSAKYKAV-FAEPKGSTR----TQRDQYGRPSEDNPLYSSSGRGNSNFNGGGSSS 232
                   .|......||: ...|:|.::    ...:::|: ::.....:..|.||....||....
  Fly   230 -------REEAQEAIKALNNTVPEGGSQPIWVRLAEEHGK-AKAAQFMAQIGGGNGGGGGGPPHM 286

  Fly   233 GGGG----SNSYNNDWNVSQNN 250
            |.||    .:.:||..:.:.:|
  Fly   287 GPGGPMHPPHHHNNHHHNNHHN 308

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:409801	20/105 (19%)
		RRM_SF	122..195	CDD:473069	15/74 (20%)
		RRM3_RBM45	267..339	CDD:409803
		RRM4_RBM45	383..449	CDD:409804
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	42/213 (20%)