Protein Alignment CG1316 and Pabpc6

DIOPT Version :9

• Sequence 1: NP_647887.1
• Gene: CG1316 / 38526
• FlyBaseID: FBgn0035526
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_001099678.1
• Gene: Pabpc6 / 292295
• RGDID: 1311201
• Length: 643
• Species: Rattus norvegicus
• Alignment Length: 527
• Identity: 103/527 - (19%)
• Similarity: 176/527 - (33%)
• Gaps: 176/527 - (33%)

  Fly    21 NDDDPPMSRLFIICNKAH---TEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAA 82
            |..||..|...:.....|   ||....|.|||.|.|..|.|.:|:.|:.:.|.|.|.|.:..||.
  Rat     2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAE 66

  Fly    83 KAQEEMN-----GKT---------------------IGKMDRTL------------------KVL 103
            :|.:.||     ||.                     :..:||::                  ||:
  Rat    67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131

  Fly   104 VAANRNQG--------SNKSENEQEKYVRLFIVIPKT------------------ATE------- 135
            ...|.::|        ..::|...||...:|:...|.                  |.|
  Rat   132 CDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIK 196

  Fly   136 ---EDIREE-----FSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAK---YKA 189
               ||:.:|     ||::|...||.::.:: :|..||||:|.|.:...|..|.:..:.|   .|.
  Rat   197 NLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQ 260

  Fly   190 VF---AEPKGSTRTQ-RDQYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQNN 250
            ::   |:.|...:|: :.::|:..:|.|......:..|
  Rat   261 IYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRS--------------------------- 298

  Fly   251 DMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMREHGPRTNEALVVYDNP 315
                 :|.|.|     :....|:.:.::.::|.:.|.....:...::..|.|.......|.:.:|
  Rat   299 -----VRCQGV-----NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSP 353

  Fly   316 EAAIYAKDKLHG-------LEYPMGERIIVKVNGMSSARMDTSFIDKRTKKDAICNVPLPPTQPL 373
            |.|..|..:::|       |...:.:|     .....|.:...::.:.....|:.|..:.|.||
  Rat   354 EEATKAVTEMNGRIVATKPLYVALAQR-----KEERQAHLSNQYMQRMASTSAVPNPGINPFQP- 412

  Fly   374 ASPDDQVAQRLFIVLSANLPHSILKNIFSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNG 438
                   ||.|                    ||.......|.:|.| ..||..::.|........
  Rat   413 -------AQGL--------------------SGYFMTATAPTQNRG-TYYAPNQTTQQGPSARGS 449

  Fly   439 AEICGTK 445
            |:  ||:
  Rat   450 AQ--GTR 454

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG1316	NP_647887.1	RRM1_RBM45	25..105	CDD:240812	30/126 (24%)
		RRM2_RBM45	122..195	CDD:240813	24/111 (22%)
		RRM3_RBM45	267..339	CDD:240814	13/78 (17%)
		RRM4_RBM45	383..449	CDD:240815	12/63 (19%)
Pabpc6	NP_001099678.1	PABP-1234	11..622	CDD:130689	99/518 (19%)
		RRM1_I_PABPs	12..91	CDD:240824	24/78 (31%)
		RRM2_I_PABPs	97..172	CDD:240825	11/74 (15%)
		RRM3_I_PABPs	190..269	CDD:240826	20/79 (25%)
		RRM4_I_PABPs	303..380	CDD:240827	13/81 (16%)
		PABP	555..621	CDD:279051

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910