DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and RBM45

DIOPT Version :9

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_016858809.1 Gene:RBM45 / 129831 HGNCID:24468 Length:617 Species:Homo sapiens


Alignment Length:643 Identity:181/643 - (28%)
Similarity:271/643 - (42%) Gaps:233/643 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYRSQSRSGGG-RGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQE 66
            |....|.|||| |.|.:  :.|:||.||:|::.:|...|...||.|||:|:|:|||||:||||:|
Human     2 DEAGSSASGGGFRPGVD--SLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKE 64

  Fly    67 NKGIAYVKFSKTSDAAKAQEEMNGKTIG------------------------------------- 94
            :||||:|||:::|.|.:|.|||:|:.:|                                     
Human    65 SKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVRVPGSGCPRGKEWASWTSLHLLLCRGEG 129

  Fly    95 -----------------------------KM--------------------------DRTL---- 100
                                         |:                          |||.    
Human   130 GVEHPFPAADQTAPGLGTGAALRRGSPPTKLRRVAGKGTGCGVFAPRERTRQPRPPGDRTAVAGL 194

  Fly   101 ------------------------------------------------KVLVAANRNQGSNKSEN 117
                                                            :|.:|.:|:.||:: :.
Human   195 PLSLALTNPPALEFTAKLVLAYFEYFSDLPLSDAQISIYKKRKNSTFPQVFIAQSRSSGSHR-DV 258

  Fly   118 EQEKYVRLFIVIPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFEN 182
            |.|:..|:|::|||:.||||:||:|..:||:|..:|:|.|..|..||.||||:.|...||.|.||
Human   259 EDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIEN 323

  Fly   183 CSAKYKAVFAEP--KGSTRTQRDQYGR---------------PSEDNPLYSSSGRGNSNFNGGGS 230
            |...::|:.|||  |.|..:::|.|..               |.|....:||..:.:|.      
Human   324 CDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSEFSSFDKNDSR------ 382

  Fly   231 SSGGGGSNSYNNDWNVSQNNDMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYC 295
                 |..:.:...:|           :..||              ..::||:.:|||:|||:||
Human   383 -----GQEAISKRLSV-----------VSRVP--------------FTEEQLFSIFDIVPGLEYC 417

  Fly   296 QIMREHGPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGERIIVK-VNGMSSA-----RMDTSFID 354
            ::.|:........:|.|.|..:|||||.||||.:||.|.||.|. ::..|:|     :|.|..:.
Human   418 EVQRDPYSNYGHGVVQYFNVASAIYAKYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVA 482

  Fly   355 KRTKKDAICNVP------------------------LPPTQPLASPDDQVAQRLFIVLSAN-LPH 394
            .:. ...:.|.|                        ||..:..|..:..|.:|||||.:.: ||.
Human   483 AQL-ASMVWNNPSQQQFMQFGGSSGSQLPQIQTDVVLPSCKKKAPAETPVKERLFIVFNPHPLPL 546

  Fly   395 SILKNIFSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKVMEAE 452
            .:|::||..:..||:|||:..||.||.|||:..||..||.||:|..:.|.::|||.|:
Human   547 DVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLAD 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 44/223 (20%)
RRM2_RBM45 122..195 CDD:240813 36/74 (49%)
RRM3_RBM45 267..339 CDD:240814 28/71 (39%)
RRM4_RBM45 383..449 CDD:240815 31/66 (47%)
RBM45XP_016858809.1 RRM1_RBM45 23..101 CDD:409801 39/77 (51%)
PABP-1234 <41..206 CDD:130689 36/164 (22%)
RRM2_RBM45 263..336 CDD:409802 35/72 (49%)
RRM3_RBM45 389..461 CDD:409803 31/96 (32%)
RRM4_RBM45 534..601 CDD:409804 31/66 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165145844
Domainoid 1 1.000 79 1.000 Domainoid score I8716
eggNOG 1 0.900 - - E1_2CAJT
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H15560
Inparanoid 1 1.050 275 1.000 Inparanoid score I2977
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48842
OrthoDB 1 1.010 - - D299261at33208
OrthoFinder 1 1.000 - - FOG0007975
OrthoInspector 1 1.000 - - oto91200
orthoMCL 1 0.900 - - OOG6_108069
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5751
SonicParanoid 1 1.000 - - X5918
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.700

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