DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and rbm45

DIOPT Version :9

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_002935727.1 Gene:rbm45 / 100379755 XenbaseID:XB-GENE-987235 Length:475 Species:Xenopus tropicalis


Alignment Length:529 Identity:178/529 - (33%)
Similarity:271/529 - (51%) Gaps:120/529 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDYRSQSRSGGGRGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQ 65
            |.|......|||        |.:|||.||:|::.:|..||:..||.||.:|:|:||||||||.|:
 Frog     1 MEDSSGFRPSGG--------NLEDPPNSRVFLVVSKYVTEDLIRERFSDFGDIQDIWVVKDKQTK 57

  Fly    66 ENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFIVIP 130
            |:||||:||::|:|.|.||.|||:|:.:.:..:.:||.:|.:|...|:: :.|.|:..|:|::||
 Frog    58 ESKGIAFVKYAKSSQACKAMEEMHGRCLSESTKPIKVFIAQSRGSTSHR-DVEDEELTRIFVMIP 121

  Fly   131 KTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPK 195
            |:.||||::::|.::|.:|..:|:|.||.|..||..||||.|...||:|.|||...:||:.||||
 Frog   122 KSYTEEDVKQKFKEYGQIEYCSIIKNKNTGESKGLAYVRFLKPSQAALAIENCDRSFKAILAEPK 186

  Fly   196 GSTRTQRDQYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWN---VSQNN------- 250
                                          |.|| |.||...|.|:|...   :.|::       
 Frog   187 ------------------------------NKGG-SGGGAAENDYHNSARQEAMMQHDHAAAAAT 220

  Fly   251 -----------DMAAFLRMQN------VPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIM 298
                       |.:|..|.|.      :.|::...:         |:|...|||::|||:||::.
 Frog   221 VFPYEYDYASYDKSADARTQETISKRLIVVSRLPLI---------QEQAHNLFDLVPGLEYCEVQ 276

  Fly   299 REHGPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGER-----------------------IIVKV 340
            |:.......|:|.|.|..:|||||.||||.|||.|.|                       :..:|
 Frog   277 RDPYNSFGHAIVQYQNISSAIYAKFKLHGFEYPPGNRLGVSYLNDGGDGSELLRKMASQMVAAQV 341

  Fly   341 NGM---SSARMDT---------SFIDKRTKKDAICNVPLPPTQPLASPDDQVAQRLFIVLSAN-L 392
            :.|   ||....|         |.:..:.:.||    .:|..:..|..|.|..:|||||.:.: |
 Frog   342 SSMVWGSSQHYPTAPPYERPYASPVTSQLQTDA----AIPSVKKKAPSDAQSKERLFIVFNPHPL 402

  Fly   393 PHSILKNIFSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKVMEAEERSGS 457
            |..:::::|..:..||:||::|.||.||.:||::.||..||..|:|..:.|.|:|||:|:    |
 Frog   403 PLDVMEDVFCRFGNLIEVYIVPGKNVGYARYADLSSANDAIAVLHGKMVNGVKLKVMQAD----S 463

  Fly   458 DGDDGGRKR 466
            ..|:..:::
 Frog   464 PRDESNKRQ 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 41/79 (52%)
RRM2_RBM45 122..195 CDD:240813 34/72 (47%)
RRM3_RBM45 267..339 CDD:240814 29/94 (31%)
RRM4_RBM45 383..449 CDD:240815 28/66 (42%)
rbm45XP_002935727.1 RRM1_RBM45 17..97 CDD:409801 41/79 (52%)
RRM2_RBM45 113..186 CDD:409802 34/72 (47%)
RRM3_RBM45 245..317 CDD:409803 30/80 (38%)
RRM4_RBM45 392..459 CDD:409804 28/66 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 75 1.000 Domainoid score I8928
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H15560
Inparanoid 1 1.050 273 1.000 Inparanoid score I2919
OMA 1 1.010 - - QHG48842
OrthoDB 1 1.010 - - D299261at33208
OrthoFinder 1 1.000 - - FOG0007975
OrthoInspector 1 1.000 - - oto104981
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5751
SonicParanoid 1 1.000 - - X5918
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.010

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