DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and MET30

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_012218.1 Gene:MET30 / 854765 SGDID:S000001308 Length:640 Species:Saccharomyces cerevisiae


Alignment Length:629 Identity:160/629 - (25%)
Similarity:255/629 - (40%) Gaps:165/629 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   796 STPRSSQHLGPTAV------LSVTPSS-HLTSSTPGS---ALGRRTPRSVP--------SRDNPP 842
            |...:|..:..||:      |.:|.|| .|...:.|.   .:..|:|.|.|        :|..|.
Yeast    22 SNSNNSSEMTDTAMMPPLKRLLITGSSDDLAQGSSGKKKMTMATRSPSSSPDLATNDSGTRVQPL 86

  Fly   843 PE------------------------------------------------LQHWLAQFQRWSHVE 859
            ||                                                :.|.::::...:...
Yeast    87 PEYNFTKFCYRHNPDIQFSPTHTACYKQDLKRTQEINANIAKLPLQEQSDIHHIISKYSNSNDKI 151

  Fly   860 RLLALDRLID-HCDP------SQVRHMMKVIEPQFQRDFISLLPRELALFVLSYLEPKDLLRAAQ 917
            |.|.||.::. .|.|      |.|.||:|:       ||||:||:||:|.:||||:.:.|..|.:
Yeast   152 RKLILDGILSTSCFPQLSYISSLVTHMIKI-------DFISILPQELSLKILSYLDCQSLCNATR 209

  Fly   918 TCRSWRFLCDDNLLWKEKC-----RKAQ---------ILAEPRSDRPKRGRDGN---MPPIASPW 965
            .||.|:.|.||:.:|...|     ||..         .:...|..:...|...|   ......||
Yeast   210 VCRKWQKLADDDRVWYHMCEQHIDRKCPNCGWGLPLLHMKRARIQQNSTGSSSNADIQTQTTRPW 274

  Fly   966 KAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRT 1030
            |..|..:..:|.|||....|..: .|||.|.|:| |||:...:.:||.|:|:.:|....||.:|.
Yeast   275 KVIYRERFKVESNWRKGHCRIQE-FKGHMDGVLT-LQFNYRLLFTGSYDSTIGIWDLFTGKLIRR 337

  Fly  1031 LVGHTGGVWSSQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDA 1095
            |.||:.||.:.......:|:||.|:|::||:..:|.|:.|.:||:.:|..:..:...:||||.|.
Yeast   338 LSGHSDGVKTLYFDDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVDSYQKVIVSGSADK 402

  Fly  1096 TLRVWDIEQGSCLHVLVGHLAAVRCVQYDGKLI--VSGAYDYMVKIWHPERQECLHTLQGHTNRV 1158
            |::||.:|..:| :.|.||...|.||:...|..  .|.:.|..:::|......||...:||..:|
Yeast   403 TVKVWHVESRTC-YTLRGHTEWVNCVKLHPKSFSCFSCSDDTTIRMWDIRTNSCLKVFRGHVGQV 466

  Fly  1159 YSL---------------------------QFDG----------------------LHVVSGSLD 1174
            ..:                           ..||                      .|::|..||
Yeast   467 QKIIPLTIKDVENLATDNTSDGSSPQDDPTMTDGADESDTPSNEQETVLDENIPYPTHLLSCGLD 531

  Fly  1175 TSIRVWDVETGNCKHTLMGHQSLTSGMELRQNILVSGNADSTVKVWDITTGQCLQTLSG-----P 1234
            .:|::|||:||.|..|..||......:......::||:.|.::||||:.:|:|:.|.:|     .
Yeast   532 NTIKLWDVKTGKCIRTQFGHVEGVWDIAADNFRIISGSHDGSIKVWDLQSGKCMHTFNGRRLQRE 596

  Fly  1235 NKHH---------SAVTCLQFNSRFVVTSSDDGTVKLWDVKTGD 1269
            .:|.         :.:.|:........:..:.|.||::.....|
Yeast   597 TQHTQTQSLGDKVAPIACVCIGDSECFSGDEFGCVKMYKFDLND 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689 21/50 (42%)
WD40 <981..1274 CDD:225201 94/354 (27%)
WD40 988..1264 CDD:238121 92/340 (27%)
WD40 repeat 998..1033 CDD:293791 13/34 (38%)
WD40 repeat 1039..1073 CDD:293791 10/33 (30%)
WD40 repeat 1078..1112 CDD:293791 11/33 (33%)
WD40 repeat 1119..1152 CDD:293791 8/34 (24%)
WD40 repeat 1158..1192 CDD:293791 15/82 (18%)
WD40 repeat 1200..1232 CDD:293791 10/31 (32%)
WD40 repeat 1241..1263 CDD:293791 4/21 (19%)
MET30NP_012218.1 F-box-like 184..228 CDD:403981 20/43 (47%)
WD40 295..590 CDD:238121 86/297 (29%)
WD40 repeat 305..340 CDD:293791 14/35 (40%)
WD40 repeat 346..380 CDD:293791 10/33 (30%)
WD40 repeat 385..418 CDD:293791 11/33 (33%)
WD40 repeat 425..460 CDD:293791 8/34 (24%)
WD40 repeat 488..549 CDD:293791 14/60 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I2971
eggNOG 1 0.900 - - E1_KOG0274
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002731
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 1 1.000 - - X2103
TreeFam 00.000 Not matched by this tool.
65.840

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