DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and AT5G40880

DIOPT Version :10

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_198904.1 Gene:AT5G40880 / 834089 AraportID:AT5G40880 Length:472 Species:Arabidopsis thaliana


Alignment Length:358 Identity:91/358 - (25%)
Similarity:147/358 - (41%) Gaps:82/358 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   929 NLLWKEKCRKAQILAEPRSDRPKR-GRDGNMPPIASPWKAAYMRQHIIEMNWRSRPVRKPKVLKG 992
            ||:|..|..|:     |..:||:: ..:|:..|            .:|....|.....:...:.|
plant    79 NLVWTSKEYKS-----PEGNRPRQNAANGSAKP------------QVIGTGHRVSNQPRKNAVYG 126

  Fly   993 HDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMSGNIIISGSTDRTL 1057
            .....::..:..|.|:......:....|.  :|.|.:                     |...:.|
plant   127 PRSSSLSDTRGCGPRLNGSPKKSVCNFWK--DGNCKK---------------------GEKCQFL 168

  Fly  1058 KVWDMDSG-ACVHTLQGHTSTVRCMHL-HGS-KVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVR 1119
            ..|....| |.|..|:||.:.::.:.| .|| |:.|.|.|.||.:||...|.|          ||
plant   169 HSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQC----------VR 223

  Fly  1120 CVQYD---GKLIVSGAYDYM-----VKIWHPERQECLHTLQGHTNRVYSLQFDGLHVVSGSLDTS 1176
            .:...   |.||..|.:.::     ||.::.:..:.:| |:|...:|:::......:.:|:...|
plant   224 SINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVH-LEGVVGQVHAMTAANGMLFAGTSSGS 287

  Fly  1177 IRVW---DVETGNCKH--TLMGHQS------LTSGMELRQNILVSGNADSTVKVWDITTGQCLQT 1230
            |.||   |.|:...|:  :|.||.|      :..|     .:|.||:.|.|:||||:.|.||..|
plant   288 ILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGG-----EVLYSGSVDKTIKVWDLNTLQCRMT 347

  Fly  1231 LSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKLW 1263
            |   .:|...||.|....:.:::||.|||:|||
plant   348 L---KQHIGTVTSLLCWDKCLISSSLDGTIKLW 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box_FBXW7 875..933 CDD:438905 2/3 (67%)
WD40 <979..1267 CDD:441893 80/307 (26%)
WD40 repeat 998..1033 CDD:293791 5/34 (15%)
WD40 repeat 1039..1073 CDD:293791 7/34 (21%)
WD40 repeat 1078..1112 CDD:293791 13/35 (37%)
WD40 repeat 1119..1152 CDD:293791 8/40 (20%)
WD40 repeat 1158..1192 CDD:293791 9/38 (24%)
WD40 repeat 1200..1232 CDD:293791 14/31 (45%)
WD40 repeat 1241..1263 CDD:293791 9/21 (43%)
AT5G40880NP_198904.1 YTH1 68..>170 CDD:227416 20/130 (15%)
ZnF_C3H1 145..170 CDD:214632 5/47 (11%)
WD40 179..465 CDD:475233 68/218 (31%)
WD40 repeat 270..310 CDD:293791 9/39 (23%)
WD40 repeat 315..349 CDD:293791 15/41 (37%)
WD40 repeat 356..396 CDD:293791 10/22 (45%)
WD40 repeat 403..437 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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