DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and Daw1

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_001359172.1 Gene:Daw1 / 71227 MGIID:1923089 Length:428 Species:Mus musculus


Alignment Length:426 Identity:113/426 - (26%)
Similarity:198/426 - (46%) Gaps:76/426 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   911 DLLRAAQTCR------SWRFLCDDN-----------LLWKEKCRKAQILAEPRSDRPKRGRDGNM 958
            |||..:..|:      ...|..|.|           |:...:.::.::|.:...::.::..|.|.
Mouse    31 DLLELSPRCKFDMQVFGVNFSTDVNTLVGEIQQAEPLITASRTKQVRLLVQRLQEKLRQHSDHNF 95

  Fly   959 PPIASPWKAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAV 1023
                  :....:|.||:.:                   ....|..:|:..::||.|.|.|||...
Mouse    96 ------YLFKVLRAHILPL-------------------TNVALNKAGSCFITGSYDRTCKVWDTA 135

  Fly  1024 NGKCLRTLVGHTGGVWSSQMS---GNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLH- 1084
            :|:.|.||.||...|::...:   |:.|.:||.|:|.|:|..::|.|.||.:|||:.:.|:..: 
Mouse   136 SGEELHTLEGHKNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNP 200

  Fly  1085 -GSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQYD--GKLIVSGAYDYMVKIWHPERQE 1146
             .:.|.:||.|.|.::|||:.|..:..|.||||.:..:.:|  |..|::|::|:.|.:|......
Mouse   201 QSTVVATGSMDTTAKLWDIQNGEEVVTLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGR 265

  Fly  1147 CLHTLQGHTNRVYSLQF--DGLHVVSGSLDTSIRVWDVETGNCKHTLMGH--QSLTSGMELRQNI 1207
            .:|||.||...:.|..|  |...:::||:|.:..:||..:|....||.||  :.|.|..:....:
Mouse   266 KVHTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATSGKYVATLTGHDDEILDSCFDYTGKL 330

  Fly  1208 LVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFN--SRFVVTSSDDGTVKLWDVKTGDF 1270
            :.:.:||.|.:|::.||.:|:..|.|   |...::.:.||  ...::|.|.|.|.::|||:||..
Mouse   331 IATASADGTARVYNATTRKCVTKLEG---HEGEISKISFNPQGNRLLTGSSDKTARIWDVQTGQC 392

  Fly  1271 IR------------------NLVALDSGGSGGVVWR 1288
            ::                  |:|...|..:...:||
Mouse   393 LQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIWR 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689 8/43 (19%)
WD40 <981..1274 CDD:225201 94/323 (29%)
WD40 988..1264 CDD:238121 89/288 (31%)
WD40 repeat 998..1033 CDD:293791 13/34 (38%)
WD40 repeat 1039..1073 CDD:293791 12/36 (33%)
WD40 repeat 1078..1112 CDD:293791 10/35 (29%)
WD40 repeat 1119..1152 CDD:293791 9/34 (26%)
WD40 repeat 1158..1192 CDD:293791 10/35 (29%)
WD40 repeat 1200..1232 CDD:293791 7/31 (23%)
WD40 repeat 1241..1263 CDD:293791 6/23 (26%)
Daw1NP_001359172.1 WD40 99..133 CDD:197651 11/52 (21%)
WD40 repeat 109..145 CDD:293791 13/35 (37%)
WD40 139..428 CDD:238121 87/291 (30%)
WD40 repeat 150..188 CDD:293791 13/37 (35%)
WD40 repeat 194..230 CDD:293791 11/35 (31%)
WD40 repeat 235..271 CDD:293791 9/35 (26%)
WD40 repeat 278..313 CDD:293791 10/34 (29%)
WD40 repeat 319..355 CDD:293791 9/35 (26%)
WD40 repeat 361..397 CDD:293791 11/35 (31%)
WD40 repeat 403..427 CDD:293791 3/23 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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