DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and daw1

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_001037817.1 Gene:daw1 / 556760 ZFINID:ZDB-GENE-050419-255 Length:418 Species:Danio rerio


Alignment Length:301 Identity:98/301 - (32%)
Similarity:161/301 - (53%) Gaps:20/301 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   985 RKPKVLKGHDDHV--ITCLQF--SGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMS- 1044
            ||..:.:....|:  :|.:.|  ||:..::||.|.|.|:|...:|:.|.||.||...|::...: 
Zfish    80 RKFYLFRALQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNN 144

  Fly  1045 --GNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLH--GSKVVSGSRDATLRVWDIEQG 1105
              |:.:.:||.|:|.|:|..::|.|.:|.:|||:.:.|:..:  .:.|.:||.|.|.::||:|.|
Zfish   145 PYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESG 209

  Fly  1106 SCLHVLVGHLAAV--RCVQYDGKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQF--DGL 1166
            ..:..|.||.|.:  .|....|..:|:|::|:...:|.......:|.|.||...:..:||  |..
Zfish   210 EEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCS 274

  Fly  1167 HVVSGSLDTSIRVWDVETGNCKHTLMGH--QSLTSGMELRQNILVSGNADSTVKVWDITTGQCLQ 1229
            .:.:.|||.|.:|||.|.|.|..||:||  :.|.........::.:.:||.|.:|:...|.|||.
Zfish   275 LIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLC 339

  Fly  1230 TLSGPNKHHSAVTCLQFNSR--FVVTSSDDGTVKLWDVKTG 1268
            .|.|   |...::.:.||::  .|:|:|.|.|.::|.||||
Zfish   340 QLEG---HKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTG 377

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689
WD40 <981..1274 CDD:225201 98/301 (33%)
WD40 988..1264 CDD:238121 91/292 (31%)
WD40 repeat 998..1033 CDD:293791 14/36 (39%)
WD40 repeat 1039..1073 CDD:293791 10/36 (28%)
WD40 repeat 1078..1112 CDD:293791 10/35 (29%)
WD40 repeat 1119..1152 CDD:293791 7/32 (22%)
WD40 repeat 1158..1192 CDD:293791 14/35 (40%)
WD40 repeat 1200..1232 CDD:293791 8/31 (26%)
WD40 repeat 1241..1263 CDD:293791 7/23 (30%)