DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and slmb

DIOPT Version :10

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster


Alignment Length:591 Identity:180/591 - (30%)
Similarity:260/591 - (43%) Gaps:137/591 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   835 VPSRDNPP---PELQHWLAQFQRWSH------VERLLALDRLIDHCDPSQVRHMMKVIEPQFQRD 890
            |..:|:.|   .|.:.....|.:||.      ||.||:  |:. |....|:...:|   |..|||
  Fly    29 VRKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLS--RMC-HYQHGQINAYLK---PMLQRD 87

  Fly   891 FISLLP----RELALFVLSYLEPKDLLRAAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRPK 951
            ||:|||    ..:|..:||||:.:.|..:...|:.|..:..:.:|||:...:     :.|:|...
  Fly    88 FITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIER-----KVRTDSLW 147

  Fly   952 RG---RDGNMPPIASPWKAAYMRQH---------------IIEMNWRS-RPVRKPKVLKGHDDHV 997
            ||   |...|..:..|......|.|               .||.|||: |.:.:....:..:...
  Fly   148 RGLAERRNWMQYLFKPRPGQTQRPHSFHRELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKG 212

  Fly   998 ITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMSGNIIISGSTDRTLKVWDM 1062
            :.|||:...:||||..|||:|:|...:.:|::||:||||.|...|....:|||||:|.|::|||:
  Fly   213 VYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDKVIISGSSDSTVRVWDV 277

  Fly  1063 DSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVWDIEQGSCL---HVLVGHLAAVRCVQYD 1124
            ::|..|:||..|...|..:..:...:|:.|:|.::.|||:...|.:   .|||||.|||..|.:|
  Fly   278 NTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFD 342

  Fly  1125 GKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKH 1189
            .|.|||.:.|..:|:|.....|.:.||.||...:..||:....|||||.|.|||:||:|.|.|..
  Fly   343 EKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLR 407

  Fly  1190 TLMGHQSLTSGMELRQNILVSGNADSTVKVWDITTG---------QCLQTLSGPNKHHSAVTCLQ 1245
            .|.||:.|...:......:|||..|..:||||:...         .||.||.   :|...|..||
  Fly   408 VLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLV---EHTGRVFRLQ 469

  Fly  1246 FNSRFVVTSSDDGTVKLWDV--------KTG-----------DFI-RNLVAL------------- 1277
            |:...:|:||.|.|:.:||.        |||           .|: |.|..|             
  Fly   470 FDEFQIVSSSHDDTILIWDFLNFTPNENKTGRTPSPALMEHXHFVQRQLRELHLQSSSEGEEDDD 534

  Fly  1278 -----------------------------DSGGSGGVVWRIRANDTKLICAVGSRNGTEETKLMV 1313
                                         |:||||.|              .||.:..|...   
  Fly   535 ADEDDEDDFEEEDSRNDAGAFMGGYVRHRDAGGSGSV--------------TGSGSDPESDD--- 582

  Fly  1314 LDFDVE 1319
            ||||::
  Fly   583 LDFDID 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box_FBXW7 875..933 CDD:438905 20/61 (33%)
WD40 <979..1267 CDD:441893 113/308 (37%)
WD40 repeat 998..1033 CDD:293791 15/34 (44%)
WD40 repeat 1039..1073 CDD:293791 15/33 (45%)
WD40 repeat 1078..1112 CDD:293791 9/36 (25%)
WD40 repeat 1119..1152 CDD:293791 11/32 (34%)
WD40 repeat 1158..1192 CDD:293791 16/33 (48%)
WD40 repeat 1200..1232 CDD:293791 11/40 (28%)
WD40 repeat 1241..1263 CDD:293791 9/21 (43%)
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:463465 12/43 (28%)
F-box_FBXW1B 85..135 CDD:438954 18/49 (37%)
WD40 210..488 CDD:238121 108/280 (39%)
WD40 repeat 213..248 CDD:293791 15/34 (44%)
WD40 repeat 254..288 CDD:293791 15/33 (45%)
WD40 repeat 293..330 CDD:293791 9/36 (25%)
WD40 repeat 337..370 CDD:293791 11/32 (34%)
WD40 repeat 376..410 CDD:293791 16/33 (48%)
WD40 repeat 416..459 CDD:293791 11/42 (26%)
WD40 repeat 465..487 CDD:293791 9/21 (43%)

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