DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and Fbxo24

DIOPT Version :10

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_001100600.2 Gene:Fbxo24 / 304374 RGDID:1305095 Length:590 Species:Rattus norvegicus


Alignment Length:426 Identity:80/426 - (18%)
Similarity:130/426 - (30%) Gaps:171/426 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   892 ISLLPRELALFVLSYLEPKDLLRAAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRPKRGRDG 956
            :.|.|.||...::|:|..||::...|||..:..:||...:|:..||:    ..||......|   
  Rat    49 VQLFPPELVEHIVSFLPVKDVVALGQTCHYFHEVCDAEGVWRRICRR----LSPRIRDQGSG--- 106

  Fly   957 NMPPIASPWKAAYMRQHIIEMNW-----RSRPVRK---PKVLKGH------DDHV-----ITCLQ 1002
                 |.|||.|.:..:...:.:     |.|.:.|   |.:..|:      .|||     :..|.
  Rat   107 -----ARPWKRAAILNYTKGLYFQAFGGRRRCLSKSVAPMLAHGYRRFLPTKDHVFILDYVGTLF 166

  Fly  1003 FSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGV-WSSQMSGNIIISGSTDRTLKVWDMDSGA 1066
            |..|.:||    :||                  |.: |.......::..|:.|            
  Rat   167 FLKNALVS----STL------------------GQIQWKRACRYVVLCRGAKD------------ 197

  Fly  1067 CVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVWDIEQGSCLHVL--------VGHLAAVRCVQY 1123
                   ..|..||             |...|.:       |:||        ||...:..|   
  Rat   198 -------FASDPRC-------------DTVYRKY-------LYVLATREQQAVVGSTGSRAC--- 232

  Fly  1124 DGKLIVSGAYDYMVKIWHPERQECLHT-LQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNC 1187
                                  :|:.. ||....||:.:.|                        
  Rat   233 ----------------------DCVEVYLQSSGQRVFKMTF------------------------ 251

  Fly  1188 KHTLMGHQSLTSGMELRQNILVSGNADSTVKVWDITTGQCLQTLSGPNKH--------------H 1238
            .|::...|.:..|.|.::.:|:   .....|::.:...:  ..|..|..:              |
  Rat   252 HHSMSFKQIVLVGQETQRALLL---LTEEGKIYSLVVNE--TQLDQPRSYTVQLALRKVSRCLPH 311

  Fly  1239 SAVTCLQFNSRFVVTSSDDGTVKLWDVKTGDFIRNL 1274
            ..|||:..|....:..:|.|.| .::|.|....|:|
  Rat   312 LRVTCMASNQSSTLYITDQGGV-YFEVHTPGVYRDL 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box_FBXW7 875..933 CDD:438905 13/40 (33%)
WD40 <979..1267 CDD:441893 53/330 (16%)
WD40 repeat 998..1033 CDD:293791 7/34 (21%)
WD40 repeat 1039..1073 CDD:293791 3/33 (9%)
WD40 repeat 1078..1112 CDD:293791 7/41 (17%)
WD40 repeat 1119..1152 CDD:293791 2/33 (6%)
WD40 repeat 1158..1192 CDD:293791 3/33 (9%)
WD40 repeat 1200..1232 CDD:293791 4/31 (13%)
WD40 repeat 1241..1263 CDD:293791 7/21 (33%)
Fbxo24NP_001100600.2 F-box_FBXO24 48..94 CDD:438870 14/44 (32%)
ATS1 <314..433 CDD:444065 11/34 (32%)

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