DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and Fbxw11

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:XP_038941817.1 Gene:Fbxw11 / 303024 RGDID:1309121 Length:566 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689
WD40 <981..1274 CDD:225201
WD40 988..1264 CDD:238121
WD40 repeat 998..1033 CDD:293791
WD40 repeat 1039..1073 CDD:293791
WD40 repeat 1078..1112 CDD:293791
WD40 repeat 1119..1152 CDD:293791
WD40 repeat 1158..1192 CDD:293791
WD40 repeat 1200..1232 CDD:293791
WD40 repeat 1241..1263 CDD:293791
Fbxw11XP_038941817.1 Beta-TrCP_D 102..140 CDD:403372
F-box-like 144..191 CDD:403981
WD40 264..542 CDD:238121
WD40 repeat 267..302 CDD:293791
WD40 repeat 308..342 CDD:293791
WD40 repeat 347..384 CDD:293791
WD40 repeat 391..424 CDD:293791
WD40 repeat 430..464 CDD:293791
WD40 repeat 470..513 CDD:293791
WD40 repeat 519..541 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D150270at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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