DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and Fbxw9

DIOPT Version :10

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_001075103.1 Gene:Fbxw9 / 288921 RGDID:1307002 Length:458 Species:Rattus norvegicus


Alignment Length:537 Identity:119/537 - (22%)
Similarity:198/537 - (36%) Gaps:150/537 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   823 PGSALGRRTPRSVPSRDNPPPELQHWLAQFQRWSHVERLLALDR-------------------LI 868
            |....|  .|||.....:|.||..   ...|..::|.|:|...:                   :.
  Rat     4 PSGQCG--NPRSCEDESDPEPEPD---PDAQAEAYVARVLTPPKPGMTPRRSSLQSMFSASLGMP 63

  Fly   869 DHCDPSQVRHMMKVIEPQFQRDFISLLPRELALFVLSYLEPKDLLRAAQ-TCRSWRFLCDDNLLW 932
            :..|.|:|        |......:..||.||.|.:.:||:.:.:|.... .|::...|..|.:.|
  Rat    64 ERKDASKV--------PAVSLPGLLSLPPELLLEICAYLDARVVLHVLPCVCQALHNLVRDRVTW 120

  Fly   933 KEKCRKAQILAEPRSDRPKRGRDGNMPPIASPWKAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHV 997
            :.:.::.                     :.||:                     |.|.:.:.|..
  Rat   121 RLRAQRR---------------------VRSPY---------------------PVVEEENFDWP 143

  Fly   998 ITCLQFSGNRIVSGSDDNTLKVWSAVNGK-----CLRTLVGHTGGVWSSQM--SGNIIISGSTDR 1055
            ..|::.          :..|..| |.:|:     ||..  ||...:.:..:  .|.:.:|||.||
  Rat   144 AACIEL----------EQHLARW-AEDGQRTEYFCLAD--GHFASIDAVLLLQGGTLCLSGSRDR 195

  Fly  1056 TLKVWDM------DSGACVHTL--QG---HTSTVRCMHLHGSKVVSGSRDATLRVWDI-EQGSCL 1108
            .:.:||:      .|...|..|  ||   |...|..:.....:|.|||.|:|:::||: ..|...
  Rat   196 NVNLWDLRHLGKEPSRVLVKALGTQGNSTHKGWVWSLAAQDHRVCSGSWDSTVKLWDMAADGQQF 260

  Fly  1109 HVLVGHLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQECL-HTLQGHTNRVYSLQFDGLHVVSGS 1172
            ..:.|. |||.|:.|...::|:|.||..|.|:.|.....| .:.:.|::.|.::..|..|::|||
  Rat   261 GEIKGK-AAVLCLSYQPDILVTGTYDKKVTIYDPRAGLTLVKSRRLHSSAVLAVLADDRHIISGS 324

  Fly  1173 LDTSIRVWDVETGNCKHTL--------MGHQSLTSGMELRQNIL-VSGNAD---STVKVWDITTG 1225
            .|.|:.|:|....:....|        |.:|.........|.:| |..|.|   ..|:.:|:   
  Rat   325 EDHSLVVFDRRANSVLQRLQLDSYLLCMSYQEPQLWAGDNQGLLHVFANQDGCFQLVRTFDV--- 386

  Fly  1226 QCLQTLSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKL---------------WDVKTGDFIR-NL 1274
                      .|.|.:|.::.:...:.|:|.|.|:::               .:|..|.... |:
  Rat   387 ----------GHQSQITGIKHSLGTLYTTSTDKTIRVHVPTDPPKTICTRRHHNVLNGICAEGNI 441

  Fly  1275 VALDSGGSGGVVWRIRA 1291
            |...|||....|||:.|
  Rat   442 VVAASGGLSLEVWRLLA 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box_FBXW7 875..933 CDD:438905 13/58 (22%)
WD40 <979..1267 CDD:441893 79/334 (24%)
WD40 repeat 998..1033 CDD:293791 7/39 (18%)
WD40 repeat 1039..1073 CDD:293791 11/43 (26%)
WD40 repeat 1078..1112 CDD:293791 10/34 (29%)
WD40 repeat 1119..1152 CDD:293791 10/33 (30%)
WD40 repeat 1158..1192 CDD:293791 11/41 (27%)
WD40 repeat 1200..1232 CDD:293791 7/35 (20%)
WD40 repeat 1241..1263 CDD:293791 5/36 (14%)
Fbxw9NP_001075103.1 F-box_SF 87..123 CDD:459239 8/35 (23%)
WD40 171..413 CDD:475233 68/255 (27%)
WD40 repeat 177..224 CDD:293791 13/46 (28%)
WD40 repeat 229..262 CDD:293791 10/32 (31%)
WD40 repeat 270..304 CDD:293791 10/33 (30%)
WD40 repeat 310..344 CDD:293791 10/33 (30%)
WD40 repeat 350..385 CDD:293791 8/34 (24%)
WD40 repeat 392..413 CDD:293791 5/20 (25%)

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