DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and pof1

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_593310.1 Gene:pof1 / 2542914 PomBaseID:SPAC57A10.05c Length:605 Species:Schizosaccharomyces pombe


Alignment Length:558 Identity:172/558 - (30%)
Similarity:253/558 - (45%) Gaps:111/558 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   792 YDFASTPRSSQHLGPTAVL-------------SVTPSSHLTSSTPG--SALGRRTPRSVPSRDNP 841
            |:...|...|.:|.|.|.|             |::.|:...||...  |.|..::.:.|.:    
pombe     5 YESVPTSEPSDNLAPRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEA---- 65

  Fly   842 PPELQHWLAQFQRWSHVERLLALDRLIDHCDPSQVRHMMKVIEPQFQRDFISLLPRELALFVLSY 906
                 .| |.|...|..||.|||..::::|..|.:......::...:.||:||||.|::..:||:
pombe    66 -----VW-AAFSEASCSERKLALQGILNNCSSSLLSFASSTLDSLVRLDFLSLLPVEISFRILSF 124

  Fly   907 LEPKDLLRAAQTCRSWRFLCDDNLLW--------KEKCRK---------------AQILAEPRSD 948
            |:.:.|.:|||..:.|:.|.||:::|        ..||.|               |:...:.|.:
pombe   125 LDARSLCQAAQVSKHWKELADDDVIWHRMCEQHINRKCEKCGWGLPLLERNTLYAAKASIQKRYE 189

  Fly   949 R-PKRGRD-------------------GNMPPIAS-------------------PWKAAYMRQHI 974
            | .|||.|                   .|...|:|                   |||..|..:..
pombe   190 RLTKRGVDQAHESSPVKKAKLDDYPTSSNEETISSVKPPSPNSDSKFFLPFKTRPWKEVYAERCR 254

  Fly   975 IEMNWRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVW 1039
            :|.|||....|: .||.||.|.|: |||...|.:.|||.|.|:::|:....:.:..|.||:.||.
pombe   255 VECNWRHGRCRQ-VVLSGHSDGVM-CLQLVRNILASGSYDATIRLWNLATFQQVALLEGHSSGVT 317

  Fly  1040 SSQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVWDIEQ 1104
            ..|.....:||||.|:|:::|:..:..|:..|.|||.:|.|:....:.:||||.|.|:::|....
pombe   318 CLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSG 382

  Fly  1105 GSCLHVLVGHLAAVRCVQY--DGKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFDGLH 1167
            |..: .|.||...|..|:.  |..|::||:.|..:|||..|...||||...|...|.||......
pombe   383 GKRI-TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSR 446

  Fly  1168 VVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSGM------ELRQNILVSGNADSTVKVWDITTGQ 1226
            :.|.|||.:|:.||:|...|.|||.||   ..|:      .||   |:||..|..||||:..  :
pombe   447 LFSCSLDGTIKQWDIEKKKCVHTLFGH---IEGVWEIAADHLR---LISGAHDGVVKVWEAC--E 503

  Fly  1227 CLQTLSGPNKHHS-AVTCLQFNSRFVVTSSDDGTVKLW 1263
            |:.||    |:|| .||.:......||:.|:||.:.||
pombe   504 CVHTL----KNHSEPVTSVALGDCEVVSGSEDGKIYLW 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689 19/53 (36%)
WD40 <981..1274 CDD:225201 107/292 (37%)
WD40 988..1264 CDD:238121 106/285 (37%)
WD40 repeat 998..1033 CDD:293791 11/34 (32%)
WD40 repeat 1039..1073 CDD:293791 10/33 (30%)
WD40 repeat 1078..1112 CDD:293791 10/33 (30%)
WD40 repeat 1119..1152 CDD:293791 14/34 (41%)
WD40 repeat 1158..1192 CDD:293791 14/33 (42%)
WD40 repeat 1200..1232 CDD:293791 13/37 (35%)
WD40 repeat 1241..1263 CDD:293791 7/21 (33%)
pof1NP_593310.1 F-box-like 110..156 CDD:289689 17/45 (38%)
WD40 <258..564 CDD:225201 110/295 (37%)
WD40 268..537 CDD:238121 104/282 (37%)
WD40 repeat 317..351 CDD:293791 10/33 (30%)
WD40 repeat 356..389 CDD:293791 10/33 (30%)
WD40 repeat 396..431 CDD:293791 14/34 (41%)
WD40 repeat 437..471 CDD:293791 14/33 (42%)
WD40 repeat 477..512 CDD:293791 14/43 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 45 1.000 Domainoid score I3554
eggNOG 1 0.900 - - E1_KOG0274
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002731
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.840

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