DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ago and Btrc

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:NP_001347049.1 Gene:Btrc / 12234 MGIID:1338871 Length:619 Species:Mus musculus


Alignment Length:453 Identity:157/453 - (34%)
Similarity:233/453 - (51%) Gaps:52/453 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   852 FQRWSHVERLLALDRLIDHCDPSQVRHMMKVIEPQFQRDFISLLPR----ELALFVLSYLEPKDL 912
            |::||..:::..::.||......|..|:...::|..|||||:.||.    .:|..:||||:.|.|
Mouse   155 FEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSL 219

  Fly   913 LRAAQTCRSWRFLCDDNLLWKEKCRKA-------QILAEPR-------SDRPKRGRDGNMPPIAS 963
            ..|...|:.|..:..|.:|||:...:.       :.|||.|       .::|.   |.|.|| .|
Mouse   220 CAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP---DENAPP-NS 280

  Fly   964 PWKAAYMR--QHI--IEMNWR------SRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLK 1018
            .::|.|.:  |.|  ||.|||      .|...:.:..||     :.|||:...:||||..|||:|
Mouse   281 FYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKG-----VYCLQYDDQKIVSGLRDNTIK 340

  Fly  1019 VWSAVNGKCLRTLVGHTGGVWSSQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHL 1083
            :|.....:|.|.|.||||.|...|....:||:||:|.|::|||:::|..::||..|...|..:..
Mouse   341 IWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRF 405

  Fly  1084 HGSKVVSGSRDATLRVWDIEQGSCL---HVLVGHLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQ 1145
            :...:|:.|:|.::.|||:...:.:   .|||||.|||..|.:|.|.|||.:.|..:|:|:....
Mouse   406 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC 470

  Fly  1146 ECLHTLQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSGMELRQNILVS 1210
            |.:.||.||...:..||:....|||||.|.:||:||:|.|.|...|.||:.|...:......:||
Mouse   471 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 535

  Fly  1211 GNADSTVKVWDITTG---------QCLQTLSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKLWD 1264
            |..|..:||||:...         .||:||.   :|...|..|||:...:|:||.|.|:.:||
Mouse   536 GAYDGKIKVWDLMAALDPRAPAGTLCLRTLV---EHSGRVFRLQFDEFQIVSSSHDDTILIWD 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689 17/49 (35%)
WD40 <981..1274 CDD:225201 109/296 (37%)
WD40 988..1264 CDD:238121 106/287 (37%)
WD40 repeat 998..1033 CDD:293791 15/34 (44%)
WD40 repeat 1039..1073 CDD:293791 13/33 (39%)
WD40 repeat 1078..1112 CDD:293791 8/36 (22%)
WD40 repeat 1119..1152 CDD:293791 11/32 (34%)
WD40 repeat 1158..1192 CDD:293791 15/33 (45%)
WD40 repeat 1200..1232 CDD:293791 11/40 (28%)
WD40 repeat 1241..1263 CDD:293791 9/21 (43%)
BtrcNP_001347049.1 Beta-TrCP_D 153..191 CDD:403372 8/35 (23%)
F-box-like 195..242 CDD:403981 17/46 (37%)
WD40 317..595 CDD:238121 106/285 (37%)
WD40 repeat 320..355 CDD:293791 15/34 (44%)
WD40 repeat 361..395 CDD:293791 13/33 (39%)
WD40 repeat 400..437 CDD:293791 8/36 (22%)
WD40 repeat 444..477 CDD:293791 11/32 (34%)
WD40 repeat 483..517 CDD:293791 15/33 (45%)
WD40 repeat 523..566 CDD:293791 11/42 (26%)
WD40 repeat 572..594 CDD:293791 9/21 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D150270at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.950

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