DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ago and efcab8

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:XP_031750586.1 Gene:efcab8 / 100494912 XenbaseID:XB-GENE-6462842 Length:1058 Species:Xenopus tropicalis


Alignment Length:722 Identity:155/722 - (21%)
Similarity:273/722 - (37%) Gaps:208/722 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   677 NCDEENNCSDLEEICTCQNGNGSSYGGSNASLSE-------TFDMDAMDPD-EPISLSLSSASAG 733
            ||.||::  ||.  .|.:.....:....|.:|.|       .|..:..|.| |.:...:.::..|
 Frog    90 NCKEESD--DLR--ATRRRAKQEARPAGNMTLDEFRRVLCDLFGSECFDDDMELLFNEVDTSCDG 150

  Fly   734 FTEYSLTNPSSLMSHQRKRKFNEGRLLDGGDYSVTISSSGEVGGPGSGVSDNCRK-------RIA 791
            :.::. ...:.|:...|||           ||.:.    |.|...|..|...|.:       || 
 Frog   151 YVDWG-EFCTYLLLQYRKR-----------DYRMI----GRVTFLGQPVIRLCTRNKQEPTSRI- 198

  Fly   792 YDFASTPRSSQHLGPTAVLSVTPSSHLTSSTPGSALGRRTPRSVPSRDNPPPELQHWLAQFQRWS 856
            ...:|.|       |..:|||:.:..||  |...||..:....|.:.   .|:.|....:|:.|.
 Frog   199 LAISSPP-------PMWLLSVSKTGVLT--TWDLALHPQKSYEVAAE---YPDSQAGKRRFKCWV 251

  Fly   857 HVERLLALDRLIDHCDPSQVRHMMKVIEPQFQRD--FISL----LPRELALFVLSYL-------- 907
                          .|...:.:..|:......||  |..:    |..|..||.|:::        
 Frog   252 --------------TDAVHLPNANKIAIATTSRDIHFFDVSTMNLFEEFHLFALNHVPTTFSYWY 302

  Fly   908 -----EPKDLL-----RAAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRS---DRPKRGRDGNMP 959
                 |.:.||     ..|.           |:||         |.:|::   ::|.....|   
 Frog   303 NKQSPESRSLLLWGGDNGAM-----------NVLW---------LLQPQTGVFEKPFSQHPG--- 344

  Fly   960 PIASPWKAAYMRQ---HIIEMNWRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWS 1021
                |.| .||::   |...::::..|...|:.:    ..:|.|.:.......|||..::|.:..
 Frog   345 ----PTK-IYMQELKDHSKLLSYQVIPDVHPEAI----TKLIYCPEKQLIITSSGSAQSSLLIMD 400

  Fly  1022 AVNGKCLRTLVGHTGGVWSSQMSG-----------NIIISGSTDRTLKVWDMDSGAC--VHTLQG 1073
             :|.|         |.|::.:::.           |::::|..|..:::|: ....|  :..|..
 Frog   401 -INQK---------GKVYTWKINKGVQCFDYCRALNLLVTGGFDHKVRLWN-QYVTCRPIAVLPE 454

  Fly  1074 HTSTVRCMHLHG--SKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQYDGKLIVSGAYDYM 1136
            |:..:..:.::.  .::.|.|:|:.|:||||...:|||.||   ....|:| .|::...|::.::
 Frog   455 HSMAILDVMIYQPLGQIFSFSKDSVLKVWDIPSQTCLHTLV---LKFPCIQ-PGRIQEQGSFPFL 515

  Fly  1137 VKIWHPER-----------------QECLHTLQGHTNRVYSLQFDGL-H-VVSGSLDTSIRVWDV 1182
            :...:|.|                 :....|...|...|..|.:... | :|:||.|:::.||||
 Frog   516 LVPTNPSRLLVCYSDYIGILRLARAEPTEGTFFTHRAPVTCLLYSSFCHLIVTGSEDSTVAVWDV 580

  Fly  1183 ETGNCKHTLMGH----QSLT-SGMELRQNILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVT 1242
            ||| .|..|:|:    :.:| ..::..|..|::|..:.|:|:|:|..|..|..|.  ....:.:|
 Frog   581 ETG-AKSLLLGNAHGQEEVTCMALDKAQRRLITGARNGTIKIWNIQNGHNLHQLE--PVEDAEIT 642

  Fly  1243 CL---QFN-------SRFVVT---------------SSDDGTVKLWDVKTGDFIRNLVALDSGGS 1282
            |:   |.|       :|.:||               |...|.:...|:.|.||..:|..|.:...
 Frog   643 CIVASQENVFLTVGWNRKIVTYDIPKTNEVYVPANHSWKGGQLHQEDILTADFCPSLGLLATASF 707

  Fly  1283 GG--VVW 1287
            .|  ::|
 Frog   708 DGEIILW 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689 12/67 (18%)
WD40 <981..1274 CDD:225201 81/356 (23%)
WD40 988..1264 CDD:238121 75/339 (22%)
WD40 repeat 998..1033 CDD:293791 8/34 (24%)
WD40 repeat 1039..1073 CDD:293791 6/46 (13%)
WD40 repeat 1078..1112 CDD:293791 11/35 (31%)
WD40 repeat 1119..1152 CDD:293791 7/49 (14%)
WD40 repeat 1158..1192 CDD:293791 15/35 (43%)
WD40 repeat 1200..1232 CDD:293791 9/31 (29%)
WD40 repeat 1241..1263 CDD:293791 9/46 (20%)
efcab8XP_031750586.1 EF-hand_8 111..164 CDD:404678 9/53 (17%)
WD40 repeat 252..288 CDD:293791 7/35 (20%)
WD40 repeat 291..340 CDD:293791 11/68 (16%)
WD40 repeat 373..412 CDD:293791 10/52 (19%)
WD40 413..715 CDD:238121 73/310 (24%)
WD40 repeat 417..454 CDD:293791 6/37 (16%)
WD40 repeat 459..495 CDD:293791 11/35 (31%)
WD40 repeat 555..593 CDD:293791 16/38 (42%)
WD40 repeat 598..634 CDD:293791 10/35 (29%)
WD40 repeat 642..681 CDD:293791 8/38 (21%)
WD40 678..>879 CDD:421866 10/37 (27%)
WD40 repeat 690..727 CDD:293791 7/25 (28%)
WD40 repeat 737..779 CDD:293791
WD40 repeat 786..812 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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