DRSC/TRiP Functional Genomics Resources

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Protein Alignment ago and fbxw9

DIOPT Version :9

Sequence 1:NP_523922.1 Gene:ago / 38516 FlyBaseID:FBgn0041171 Length:1326 Species:Drosophila melanogaster
Sequence 2:XP_002661149.1 Gene:fbxw9 / 100330184 ZFINID:ZDB-GENE-091204-198 Length:485 Species:Danio rerio


Alignment Length:496 Identity:107/496 - (21%)
Similarity:193/496 - (38%) Gaps:117/496 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   870 HCDPSQVRHMMKVIEPQFQRDFISL--LPRELALFVLSYLEPKDLLRA-AQTCRSWRFLCDDNLL 931
            ||:||.:   .....|....:.::|  ||.|:...:.|:|..:.::.. .:.|::...:.:|.|.
Zfish    31 HCEPSVI---ATDTSPSPSSNGVNLLSLPWEIVTQIASHLPAQCVINVLPKVCQTLGKVGEDRLA 92

  Fly   932 WKEKCRKAQILAEPRSD---RPKRGRDGNMPPIASPWKAAYMRQHIIEMNWRSR--PVRKPKVLK 991
            |:.:.:|   |..|.:.   .||:..|         |..|.:....:..:|:.:  |..|.::::
Zfish    93 WQLRTQK---LCGPAASFPVGPKQDFD---------WSRACLEMEELIGHWKGQGTPTEKQEMVE 145

  Fly   992 GHDDHVITCLQFSG-----------------------NRIVSGSDDNTLKVWSAVNG-----KCL 1028
              |...:.....:|                       ::..|.|..:.|:.....:|     .|:
Zfish   146 --DRQEVAAEAVNGEAPAAEANMVQMQLDVDLNAQIQSQNASSSTSSPLEHMVLPSGHIADVNCV 208

  Fly  1029 RTLVGHTGGVWSSQMSGNIIISGSTDRTLKVWDMDS---GACVHTLQG------HTSTVRCMHLH 1084
            ..|.|          :|.:..|||.||.:.:||::.   ||.:|||.|      |...|.|:...
Zfish   209 LLLGG----------AGAVCASGSRDRNVNLWDLNEGPRGALMHTLGGRGTISTHRGWVWCLASS 263

  Fly  1085 GSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQECL- 1148
            |..:.|||.|:.:::||::.|.....|:...|||.|:..:...:::|::|..:.|:.......| 
Zfish   264 GPLLASGSFDSMVKLWDLQAGGAERGLIQCKAAVLCLSCERDTVLAGSHDQRLSIYDTRAANPLV 328

  Fly  1149 HTLQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSGMELRQNILVSGNA 1213
            .:|:.|::.|..|..|...::|||.|.|:.::|...|          .|...::|...:|....:
Zfish   329 KSLRLHSDAVLCLAADDQFILSGSKDQSVALFDRRAG----------KLLQKVQLSSYLLSVSFS 383

  Fly  1214 DSTVKVWD--------ITTGQCLQTLSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKL-------- 1262
            .|.|...|        ..:..||..:.....|.|.||.:.:....:.|.|.|.::|:        
Zfish   384 GSEVWAGDNRGLLHTFSMSSSCLTPVQQFKTHTSLVTGVHYTPGALYTCSSDRSIKIHLPSAPPK 448

  Fly  1263 -------------WDVKTGDFIRNLVALDSGGSGGVVWRIR 1290
                         ..||.|     .:|:.||.....|||.|
Zfish   449 TLCTLHHQAGVNGLSVKGG-----TLAIASGDMNVEVWRPR 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
agoNP_523922.1 F-box-like 892..938 CDD:289689 10/48 (21%)
WD40 <981..1274 CDD:225201 76/361 (21%)
WD40 988..1264 CDD:238121 71/342 (21%)
WD40 repeat 998..1033 CDD:293791 7/62 (11%)
WD40 repeat 1039..1073 CDD:293791 13/36 (36%)
WD40 repeat 1078..1112 CDD:293791 10/33 (30%)
WD40 repeat 1119..1152 CDD:293791 5/33 (15%)
WD40 repeat 1158..1192 CDD:293791 10/33 (30%)
WD40 repeat 1200..1232 CDD:293791 7/39 (18%)
WD40 repeat 1241..1263 CDD:293791 6/42 (14%)
fbxw9XP_002661149.1 WD40 <199..484 CDD:225201 75/309 (24%)
WD40 200..482 CDD:295369 73/306 (24%)
WD40 repeat 258..292 CDD:293791 10/33 (30%)
WD40 repeat 297..332 CDD:293791 6/34 (18%)
WD40 repeat 339..369 CDD:293791 10/39 (26%)
WD40 repeat 409..452 CDD:293791 8/42 (19%)
WD40 repeat 459..481 CDD:293791 6/26 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0274
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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