DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pav and cmet

DIOPT Version :9

Sequence 1:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster


Alignment Length:820 Identity:199/820 - (24%)
Similarity:311/820 - (37%) Gaps:282/820 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SDKARDPVNVFCRVRPLQSDADLTSL-RVKNSTTIALNPQDQLLQHHKPHNGAQREVQYIFKHVF 93
            |.|....:.|..:|||  .:..|||| :||...:|.|..     .|.:|         |:|.:||
  Fly     2 SAKNASSIQVCIKVRP--CEPGLTSLWQVKERRSIHLAD-----SHAEP---------YVFDYVF 50

  Fly    94 QPDATQQDVYAAVAQPLVENLLKGRNSLLFTYGVTGSGKTYTMTGNLRHRGIMPRCLDVLFRTIS 158
            ...|:.|:|:..:|:.:|...::|.|..:|.||.|.|||||||.|:.::.|:|......:|:.||
  Fly    51 DEGASNQEVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDEQNPGVMVLAAKEIFQQIS 115

  Fly   159 DYQAKKFVFKPDKLNGFEILSEEDALLERQHEMNQRFAGSGRFAFRHKDSDPEIASQASVEPIPL 223
            ..                  :|.|.||.                                     
  Fly   116 SE------------------TERDFLLR------------------------------------- 125

  Fly   224 LGLDEDNMYSVFVTYIEIYNNSVYDLLEDSGIQKTLQSKIIREDANRHMFVHGVTEVE-----VK 283
                        |.||||||..:||||     .|..|...|.|..|      |:..|.     :.
  Fly   126 ------------VGYIEIYNEKIYDLL-----NKKNQDLKIHESGN------GIVNVNCEECIIT 167

  Fly   284 TVEDALEVFQMGQKRKRMGHTVLNAESSRSHSVFNIRLVQAPTD-SQGENVVQDRQNITVSQLSL 347
            :..|.|.:..:|.|.:.:|.|.:|..|||||::|.|.:....:| |..:.|:|       |.|:|
  Fly   168 SEVDLLRLLCLGNKERTVGETNMNERSSRSHAIFKIIIESRKSDHSDDDAVIQ-------SVLNL 225

  Fly   348 VDLAGSERSSRTKNTGVRLREAGNINNSLMTLRTCLEYLRENQLAASNGLAPKKVPYRDSKITHM 412
            ||||||||:.:|...|.||:|.|:||.||:.|...::.|.||   |.|    :...|||||:|.:
  Fly   226 VDLAGSERADQTGARGARLKEGGHINKSLLFLSNVIKSLSEN---ADN----RFTNYRDSKLTRI 283

  Fly   413 FKNYFDGEGQVSMIVCINPRIEDYDENMQVMKFAEMTQEVQI--------ARATPMKQ------- 462
            .:....|....|:|..|.|.|  .:|:...:.||...::::|        :.||.||:       
  Fly   284 LQASLGGNAFTSIICTIKPSI--MEESQSTLSFATRAKKIRIKPQVNEMVSDATMMKRLEREIKV 346

  Fly   463 ---------------------------------------DLGLTPGRR----------------- 471
                                                   |.|....||                 
  Fly   347 LKDKLAEEERKNENQQKVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETG 411

  Fly   472 ----------KANKLFKIAVNNLNELG-----IPEAKDL--EVDVGL-VYSLGPDF-PAYEMD-- 515
                      |.:.|.|....:.:..|     ||:..::  .:|:|. ..|:..:| ||..:|  
  Fly   412 TTEDRIDQFPKVSHLPKPVFFHTSNAGKRWDNIPKTINILGSLDIGTESNSISEEFLPAECIDFG 476

  Fly   516 SP-----EAQIKIRELMH--------YLEQRIEKR-------KKLRANLDIKCDSFRQMLMNL-- 558
            ||     :..:.||:|..        ....:|:|.       ..|..:.:::|:..:.:...|  
  Fly   477 SPRPDVLKPMLTIRQLPDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAE 541

  Fly   559 ---DRDNLQLRTELASLKAVYKQERDRSAALEKKVRIHESSIDVLNNTLSKQERQIEEL--TFKL 618
               .||||: :..||        |::|..||||:|....:..:..|:.:|:.|.::..|  |.::
  Fly   542 VTAQRDNLE-QESLA--------EKERYDALEKEVTSLRADNEAANSKISELEEKLSTLKQTMRI 597

  Fly   619 NEKENML-TQKEHEKEKQKKKFSSKLAVESDKNKREFELKLREQRVKLQERMRIKDEKLRLVSNI 682
            .|.||.: ...|.|.|..||  ||||.|:.                              |:|.:
  Fly   598 MEVENQVAVGLEFEFEAHKK--SSKLRVDD------------------------------LLSAL 630

  Fly   683 LQSED-LPSLPRSQSS---ENILNEKDRGAYTARTEESSV 718
            |:.|. :.||.:|..:   :.:.|.|:....:...|:..:
  Fly   631 LEKESTIESLQKSLDNLTRDVLRNSKEGHMLSIAPEQEDI 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 124/421 (29%)
Kinesin 42..452 CDD:278646 123/416 (30%)
MKLP1_Arf_bdg 735..837 CDD:293148
cmetNP_524993.3 KISc 8..328 CDD:214526 125/429 (29%)
Motor_domain 8..321 CDD:277568 124/422 (29%)
Smc <680..1449 CDD:224117
TMPIT 779..>867 CDD:285135
Smc 1042..1910 CDD:224117
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437970
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.