DRSC/TRiP Functional Genomics Resources

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Protein Alignment pav and sub

DIOPT Version :9

Sequence 1:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_001286548.1 Gene:sub / 44870 FlyBaseID:FBgn0003545 Length:628 Species:Drosophila melanogaster


Alignment Length:654 Identity:176/654 - (26%)
Similarity:296/654 - (45%) Gaps:157/654 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 DTSDKARDPVNVFCRVRPLQSDAD------------LTSLRVKNSTTIALNPQDQLLQHHKPHNG 80
            |:|:....| .||.|:||:: ||.            :||.:|.:::                :|.
  Fly    80 DSSNVETGP-QVFLRLRPVK-DASKAYIVSEEANVLITSCKVDSTS----------------NNV 126

  Fly    81 AQREVQYIFKHVFQPDATQQDVYAAVAQPLVENLLKGRNSLLFTYGVTGSGKTYTMTGNLRHRGI 145
            .:.|..:.|..:|.....|:|:|.....|   .:::.....:.|||.:|||||||:.|:....||
  Fly   127 NRMEKHFGFTSIFDSTVGQRDIYDTCVGP---KIMEEECVTIMTYGTSGSGKTYTLLGDDVRAGI 188

  Fly   146 MPRCLDVLFRTISDYQAKKFVFKPDKL---NGFEILSEEDALLERQHEMNQRFAGSGRFAFRHK- 206
            :||.|:.:|....|     .||:..||   ||..:..::||.|:             ....|.| 
  Fly   189 IPRALENIFTIYQD-----TVFRSPKLKLINGSIVFLQDDASLK-------------ELQIRKKL 235

  Fly   207 -DSDPEI-ASQASVEPIPLLGLDEDNMYS----------VFVTYIEIYNNSVYDLLEDSGIQKTL 259
             |..|:| |....::.:    :|.|:|:.          |:|:::||||..|||||.....|..|
  Fly   236 LDLCPDISAHHQRLKQV----IDGDHMFETKASTDVSVLVWVSFVEIYNELVYDLLAIPPKQDKL 296

  Fly   260 ---QSKIIREDANR-HMFVHGVTEVEVKTVEDALEVFQMGQKRKRMGHTVLNAESSRSHSVFNIR 320
               ..|.::...|: |:|:.|:|.|.|.:.|:||.:.::||:|.....|.:||.|||||.||.:.
  Fly   297 GEVPRKNLKIVGNKGHVFIKGLTSVFVTSSEEALRLLRLGQQRSTYASTSVNANSSRSHCVFTVD 361

  Fly   321 LVQAPTDSQGENVVQDRQNITV-SQLSLVDLAGSERSSRTKNTGVRLREAGNINNSLMTLRTCLE 384
            :::           .:|..||. |.....|||||||.:.|..:|:||:||.|||.|||.|..||:
  Fly   362 ILK-----------YNRSGITTQSSYKFCDLAGSERVNNTGTSGLRLKEAKNINTSLMVLGRCLD 415

  Fly   385 YLRENQLAASNGLAPKK----VPYRDSKITHMFKNYFDGEGQVSMIVCINPRIEDYDENMQVMKF 445
                    |::.:..||    :||||||:|.:.:....|:.:::|||.:.|..:.|:||:.|:.|
  Fly   416 --------AASTVQKKKNADIIPYRDSKLTMLLQAALLGKEKLAMIVTVTPLDKYYEENLNVLNF 472

  Fly   446 AEMTQEVQIARATPMKQDLGLTPGRRKANKLFK---IAVNNLNELGIPEAKDLEVDVGLVYSLGP 507
            |.:.:                       |.:||   |..:.::..|..|...:....|..|:   
  Fly   473 ASIAK-----------------------NIIFKEPVIKQHRVSYCGFMEFSKMSTCEGGDYT--- 511

  Fly   508 DFPAYEMDSPEAQIKIRELM--HYLEQRIEKRKKLRANLDIKCDSFRQMLMNLDRDNLQLRTELA 570
              ...|.::...|::|.:|.  |.|:.:: ..:|||..|..   ::::::.|             
  Fly   512 --KELEDENVRLQLEIEQLKYDHVLQMQL-LEEKLRRELTA---TYQEIIQN------------- 557

  Fly   571 SLKAVYKQERDRSAALEKKVRIHESSID-VLNNTLSKQERQIEELTFKLNEKENMLTQKEHEKEK 634
             .|..|:.|      .|||:.|.:...: :|::...:.|.|||:|..::.|.:|..:..:...:.
  Fly   558 -NKKQYEDE------CEKKLLIAQRESEFMLSSQRRRYEEQIEDLKDEIEELKNPASDTDISDDP 615

  Fly   635 QKKK 638
            .:.|
  Fly   616 NESK 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 139/451 (31%)
Kinesin 42..452 CDD:278646 136/446 (30%)
MKLP1_Arf_bdg 735..837 CDD:293148
subNP_001286548.1 KISc 89..477 CDD:276812 138/448 (31%)
Kinesin 93..479 CDD:278646 136/469 (29%)
GBP_C <512..603 CDD:303769 25/114 (22%)
coiled coil 576..586 CDD:293879 1/9 (11%)
coiled coil 592..603 CDD:293879 4/10 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437850
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0247
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314538at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm47185
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24115
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R641
SonicParanoid 00.000 Not matched by this tool.
76.880

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