DRSC/TRiP Functional Genomics Resources

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Protein Alignment pav and ncd

DIOPT Version :10

Sequence 1:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_476651.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster


Alignment Length:444 Identity:86/444 - (19%)
Similarity:149/444 - (33%) Gaps:141/444 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   403 VPQGQPRGTVQPSSNYATVPNYIEHKKIQKLLLLGIEGSGTSTIFKQ---AKFLYGN-------- 456
            :..|..||||..:|..::.|.:           |||.       |.:   .|..:.|        
  Fly    42 ISDGCLRGTVLQNSVGSSYPAF-----------LGIP-------FAKPPIGKLRFANPQPNDPWQ 88

  Fly   457 -KFSVEE-----LQDIKLMVQSNMY-----RYLSILLDGRERFEEEALS---HTRGLNAVEGDSG 507
             |::...     :|.:.::..|.:|     .||::.:...:..|:..|.   :.:|...:.|.:.
  Fly    89 GKYNASTTKSACIQIVTVLPSSRLYGSEDCLYLNVFMPTLQILEDALLPVMVYIQGGGFLYGSAQ 153

  Fly   508 GEEANDEGTVTTPQ-SVYTLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQ 571
            .|:.|....:|..: .|.|...||..|.     .::|||..|                      .
  Fly   154 LEQRNPARFMTWRRVIVVTFQYRLGVFG-----FLSTGDRSA----------------------P 191

  Fly   572 ATYRRKDELHFL-------------PDVAEYFLSRAMEVSSNEYE---PSERDIVYAEGVTQGNG 620
            ..:..||::..|             |:....| ..::..||.:|:   |..|.: :...|:.|. 
  Fly   192 GNFGMKDQVMVLRWVKKNIRAFGGDPNRVTIF-GESVGGSSVQYQMLSPLSRGL-FHRAVSMGG- 253

  Fly   621 LAFMEFSLSDHSPMSESYPENPDALSSPQPKYQLIRVNAKGMND-----SCKWVEMFEDVRAVIF 680
                    ||.:.:.       .|:|||. .:...:.|..|:.:     |.|.||....|.|...
  Fly   254 --------SDFNSLK-------GAISSPL-AFARAQANVVGIENANKLSSAKLVEELRKVDAYEL 302

  Fly   681 CISLSDYDQINITPESSGTVQYQNKMIQSKELFESMVKHPCFKDTPFILILNKYDQFEEKLNRAP 745
            ..|:....|.||.|.:               |:..:|:.| .:..||:.     :.......|..
  Fly   303 TRSIEQLKQWNIHPIT---------------LYLPVVEPP-EEPEPFLT-----EDPRAAWRRGA 346

  Fly   746 LTSCDWFSDFCP------VRTNNNVQSLA--YQAYFYVAMKFKLLYFSITGQKL 791
            ..:..|.:...|      .:|....:||.  :.|.|..|:.| :|..||:.:||
  Fly   347 YAAVPWMTGNIPNEGSIITQTIYKNESLIEDFNAKFVFALPF-ILGTSISKEKL 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 11/49 (22%)
PRK03918 <522..>687 CDD:235175 36/185 (19%)
MKLP1_Arf_bdg 734..840 CDD:465166 15/66 (23%)
ncdNP_476651.1 PRK03918 <204..350 CDD:235175 34/185 (18%)
KISc_C_terminal 346..672 CDD:276817 14/55 (25%)

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