DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pav and Khc

DIOPT Version :9

Sequence 1:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_476590.1 Gene:Khc / 36810 FlyBaseID:FBgn0001308 Length:975 Species:Drosophila melanogaster


Alignment Length:1088 Identity:240/1088 - (22%)
Similarity:387/1088 - (35%) Gaps:370/1088 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ARDPVNVFCRVRPLQSDADLTSLR--VKNSTTIALNPQDQLLQHHKPHNGAQREVQ-----YIFK 90
            |.|.:.|.||.|||....:....:  ||                 .|:|..:..:.     |:|.
  Fly     9 AEDSIKVVCRFRPLNDSEEKAGSKFVVK-----------------FPNNVEENCISIAGKVYLFD 56

  Fly    91 HVFQPDATQQDVYAAVAQPLVENLLKGRNSLLFTYGVTGSGKTYTMTGNLR---HRGIMPRCLDV 152
            .||:|:|:|:.||...|:.:|.::|.|.|..:|.||.|.||||:||.|.:.   .:||:||.::.
  Fly    57 KVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVND 121

  Fly   153 LFRTISDYQAKKFVFKPDKLNGFEILSEEDALLERQHEMNQRFAGSGRFAFRHKDSDPEIASQAS 217
            :|..|                                                      .|.:.:
  Fly   122 IFNHI------------------------------------------------------YAMEVN 132

  Fly   218 VEPIPLLGLDEDNMYSVFVTYIEIYNNSVYDLLEDSGIQKTLQSKIIREDANRHMFVHGVTEVEV 282
            :|            :.:.|:|.|||.:.:.|||:.|.:..:     :.||.||..:|.|.||..|
  Fly   133 LE------------FHIKVSYYEIYMDKIRDLLDVSKVNLS-----VHEDKNRVPYVKGATERFV 180

  Fly   283 KTVEDALEVFQMGQKRKRMGHTVLNAESSRSHSVFNIRLVQAPTDSQGENVVQDRQNITVSQLSL 347
            .:.||..||.:.|:..:.:..|.:|..||||||||.|.:.|       ||:  :.|.....:|.|
  Fly   181 SSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ-------ENL--ENQKKLSGKLYL 236

  Fly   348 VDLAGSERSSRTKNTGVRLREAGNINNSLMTLRTCLEYLRENQLAASNGLAPKKVPYRDSKITHM 412
            |||||||:.|:|...|..|.||.|||.||..|...:..|.:..        ...:||||||:|.:
  Fly   237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN--------KTHIPYRDSKLTRI 293

  Fly   413 FKNYFDGEGQVSMIVCINPRIEDYDENMQVMKFA--------------EMTQ------------- 450
            .:....|..:.::::|.:|...:..|....:.|.              |:|.             
  Fly   294 LQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEK 358

  Fly   451 -----------EVQIAR---------------------ATPMKQ---------DLGLTPGRRK-A 473
                       |:::||                     :||..:         :..|...|.. |
  Fly   359 NARLKGKVEKLEIELARWRAGETVKAEEQINMEDLMEASTPNLEVEAAQTAAAEAALAAQRTALA 423

  Fly   474 NKLFKIAVNNLNELGIP--------EAKDLEVDVGLVY-----------------------SLGP 507
            |....:|||....|...        :.||.|::....|                       :|..
  Fly   424 NMSASVAVNEQARLATECERLYQQLDDKDEEINQQSQYAEQLKEQVMEQEELIANARREYETLQS 488

  Fly   508 DFPAYEMDSPEAQIKIRELMHYLEQRIEKRKKLRANLDIKCDSFRQMLMNLDRDNLQLR------ 566
            :....:.::..|:.:::|::..||:       |..|.|.|.........::|..|.:|:      
  Fly   489 EMARIQQENESAKEEVKEVLQALEE-------LAVNYDQKSQEIDNKNKDIDALNEELQQKQSVF 546

  Fly   567 ----TELASLKAVYKQERDRSAAL-----------EKKVRIHESSIDVLNNTL-----SKQERQI 611
                |||..||.:...::.|...:           .:.:...|||||:..:.|     ||.|   
  Fly   547 NAASTELQQLKDMSSHQKKRITEMLTNLLRDLGEVGQAIAPGESSIDLKMSALAGTDASKVE--- 608

  Fly   612 EELTF------KLNEKENMLTQKEHEKEKQKKKFSSKLAVESDKNKREFELKL--REQRVK-LQE 667
            |:.|.      |:..:...:.|:....|.|:...:.|:: |.:|:..|:.|.:  .|.|:| |||
  Fly   609 EDFTMARLFISKMKTEAKNIAQRCSNMETQQADSNKKIS-EYEKDLGEYRLLISQHEARMKSLQE 672

  Fly   668 RMRIKDEKLRLVSNILQS--EDLPSLPRSQ------SSENILNEKDRGAYTARTEESSVPATR-- 722
            .||..:.|.|.:...:.|  |:...|..::      :.|....|:.|..:.::.:|.....||  
  Fly   673 SMREAENKKRTLEEQIDSLREECAKLKAAEHVSAVNAEEKQRAEELRSMFDSQMDELREAHTRQV 737

  Fly   723 ---TDIYATPRHGAAAANNRHRRSRSAG-------DKWLEHRAANPVPLGTIMQPYLKN------ 771
               .|..|..:|......:.|::...|.       :|..:..|.....|..|:   |.|      
  Fly   738 SELRDEIAAKQHEMDEMKDVHQKLLLAHQQMTADYEKVRQEDAEKSSELQNII---LTNERREQA 799

  Fly   772 RKSVTKLTD--LKEL-TAHGTTKYC-----------LVSQDADTDG----------------DVE 806
            ||.:..|.|  .||| |.|...|..           :|:::::.||                |..
  Fly   800 RKDLKGLEDTVAKELQTLHNLRKLFVQDLQQRIRKNVVNEESEEDGGSLAQKQKISFLENNLDQL 864

  Fly   807 TKLYKGNV---------IPTCGGGAQVVFNDV-----------------------------ECLK 833
            ||::|..|         :|......:.....|                             |.::
  Fly   865 TKVHKQLVRDNADLRCELPKLEKRLRCTMERVKALETALKEAKEGAMRDRKRYQYEVDRIKEAVR 929

  Fly   834 QK--------SPVHSPTRKRPSNGNISALGGGAV--PSTVTSAQDVAS 871
            ||        :.:..|.|.  ..|.|:..|||||  ||.:.....|.|
  Fly   930 QKHLGRRGPQAQIAKPIRS--GQGAIAIRGGGAVGGPSPLAQVNPVNS 975

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 117/438 (27%)
Kinesin 42..452 CDD:278646 115/457 (25%)
MKLP1_Arf_bdg 735..837 CDD:293148 31/190 (16%)
KhcNP_476590.1 KISc_KHC_KIF5 10..333 CDD:276820 116/427 (27%)
KISc 12..340 CDD:214526 115/432 (27%)
Apolipoprotein 595..744 CDD:279749 35/152 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437966
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24115
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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