DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pav and neb

DIOPT Version :9

Sequence 1:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster


Alignment Length:891 Identity:207/891 - (23%)
Similarity:336/891 - (37%) Gaps:267/891 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TPMRVVPKTPRVHQTVEKQRRDTSDKARDPVNVFC-------------RVRPLQSDADLTSLRVK 58
            ||.|.  |||...::     ..:..|.||.:...|             |||||.: .:.|..:|.
  Fly    85 TPGRA--KTPGTGKS-----SCSRTKERDSLMESCLSVSEESNMIVAVRVRPLNA-LECTRGQVT 141

  Fly    59 NSTTIALNPQDQLLQHHKPHNGAQREVQYIFKHVFQPD-------------ATQQDVYAAVAQPL 110
            |...:..|..:..:|     .|:..:......|.|..|             |.|..|:...|:||
  Fly   142 NVVQVHGNSNELTVQ-----AGSSADASAGVTHFFSYDQVYYSCDPERKNFACQAKVFEGTARPL 201

  Fly   111 VENLLKGRNSLLFTYGVTGSGKTYTM-----------TGNLRH--RGIMPRCLDVLFRTISDYQA 162
            ::...:|.|:.||.||.|||||:|:|           .|...|  .||:||....|||.|     
  Fly   202 IDTAFEGYNACLFAYGQTGSGKSYSMMGIEALDDAALDGGPPHDEAGIIPRFCHELFRRI----- 261

  Fly   163 KKFVFKPDKLNGFEILSEEDALLERQHEMNQRFAGSGRFAFRHKDSDPEIASQASVEPIPLLGLD 227
                               :|:..:|                          |..||        
  Fly   262 -------------------EAVKSQQ--------------------------QLQVE-------- 273

  Fly   228 EDNMYSVFVTYIEIYNNSVYDLL----------EDSGIQKTLQSKIIREDANRH-MFVHGVTEVE 281
                  |.|:|.||||..::|||          |.:.||:..|.:........| :|...|.::.
  Fly   274 ------VEVSYFEIYNEKIHDLLSVQHAAAATGESTPIQQQQQQQRPALKVREHPIFGPYVVDLS 332

  Fly   282 VKTVE--DALEVF-QMGQKRKRMGHTVLNAESSRSHSVFNIRL----------VQAPTDSQ-GEN 332
            ..:|:  .||..: .:|..::....|.:|.:||||||:|||.|          :.:.|||. ..:
  Fly   333 AHSVDSYSALRNWLAVGNSQRATASTAMNDKSSRSHSIFNIVLNLTDLSSDDGLSSDTDSSTASS 397

  Fly   333 VVQDRQNITVSQLSLVDLAGSERSSRTKNTGVRLREAGNINNSLMTLRTCLEYLRENQLAASNGL 397
            :.|.|:    |::||||||||||.|.:.:.|.|:||..:||.||:||...:..|.:::.|.:||.
  Fly   398 LRQTRR----SKISLVDLAGSERISVSGSNGERIREGVSINKSLLTLGKVIAALADSRKAIANGP 458

  Fly   398 ----APKK-VPYRDSKITHMFKNYFDGEGQVSMIVCINPRIEDYDENMQVMKFA----EMTQEVQ 453
                .|.. ||||:|.:|.:.:....|..:..|:..|:|.....||.:..:::|    .:...|:
  Fly   459 LGSGTPSTFVPYRESVLTWLLRENLGGNSKTVMLATISPASIHADETLATLRYACKARSIVNRVK 523

  Fly   454 IARATPMK--QDLGLTPGRRKA-----NKLFKIAVNNLNELGIPEAKDLEVDVGLVYSLGPDFPA 511
            :..:...|  :||.....|.|:     .:..:::.|:.|.:......:..||...|.:|......
  Fly   524 VNESPHDKIIRDLRAEVDRLKSLRNEYERQRRLSGNSNNPVPRKIIIETSVDETEVEALRQQLAE 588

  Fly   512 YEMDSPEAQ------IKIRELMHYLEQRIEKRKKLRANLDIKCDSFRQMLMNLDRD--------- 561
            .|.:...||      :|..|.....|.|:.||:.|.  |::..:..:..|:||..|         
  Fly   589 RERELSRAQKSWMEKLKEAEDQRKSELRVLKRRGLA--LELTAEQKQACLVNLTADPILSGTLFY 651

  Fly   562 -----------------------NLQLRTELASLKAVYKQERDRSAALEKKVRIHESSID---VL 600
                                   ::.|...|.:|:.. ..|.:|..    |:.:...|.|   .:
  Fly   652 LLPQGLVRIGRGRLPGGSSSSQPDIVLDGPLVALQHC-SIEHERGG----KLYVIPGSEDFETYV 711

  Fly   601 NNTLSKQERQI----------------------------EELTFKLNEKENMLTQKEH---EKEK 634
            |..|.|..||:                            ..:.|:|..:|.:..|::.   |.|.
  Fly   712 NGELLKDRRQLFHGDRLVIGGSHYFRISNPFCSQRGKADHPVDFQLAHQEILQKQEQQLRSELEA 776

  Fly   635 QKKKFSSKLAVESDKNKREFE-----LKLREQRVKLQERMRIKDEKLRLV------SNILQSEDL 688
            :|:...:|:..|..::.|:||     |:|.:.:.|....| ::.|:..|.      ...|:.||.
  Fly   777 EKRAALTKIEQERAQHARDFEERLQCLELEQFKYKCNSEM-LETERQALALAQQQEHTPLRHEDA 840

  Fly   689 PSLPRSQSS--ENI----LNEKDRGAY---------TARTEESSVP 719
            .|.|..:|:  |:|    ||..:...:         |.|..:..:|
  Fly   841 VSTPAQKSTILEDIQRIMLNPSEESLHKTQLMVKEATQRCRQLDLP 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 128/487 (26%)
Kinesin 42..452 CDD:278646 126/469 (27%)
MKLP1_Arf_bdg 735..837 CDD:293148
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 127/479 (27%)
KISc 120..525 CDD:214526 127/478 (27%)
Kinesin_assoc 524..657 CDD:292801 26/134 (19%)
FHA 634..740 CDD:238017 17/110 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437967
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24115
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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