DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pav and kif20b

DIOPT Version :9

Sequence 1:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster
Sequence 2:XP_012822228.2 Gene:kif20b / 100145121 XenbaseID:XB-GENE-1005036 Length:1864 Species:Xenopus tropicalis


Alignment Length:1049 Identity:258/1049 - (24%)
Similarity:442/1049 - (42%) Gaps:284/1049 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VHQTVEKQRRDTSDKARDPVNVFCRVRPL------QSDADLTSLRVKNSTTIALNPQDQLLQHHK 76
            |.:|...|:....  :::.:.|:.||||.      |::|. ..:.:.:|:::.:.|         
 Frog    49 VSETNPNQKNSLG--SQEHMQVYLRVRPFTAVEIEQNEAQ-DCISIPDSSSVLVKP--------- 101

  Fly    77 PH-----------NGAQREVQYIFKHVFQPDATQQDVYAAVAQPLVENLLKGRNSLLFTYGVTGS 130
            ||           ||:..: ::.|.|||.||.||...:....:..|.:.:||:|.|:||||||.:
 Frog   102 PHNSQSCRLSDKGNGSMAQ-KFTFTHVFGPDTTQAQFFDGTIKQHVIDFMKGQNRLIFTYGVTNA 165

  Fly   131 GKTYTMTGNLRHRGIMPRCLDVLFRTISDYQAKKFVFKPDKLNGFEILSEE---------DALLE 186
            |||:|..|.....||:||.:|:||.:|......|...||.:...:..|::|         :::|.
 Frog   166 GKTFTFQGTKDDAGILPRSMDMLFNSIQGRVYTKMDVKPYRCKDYIRLTKEQVKAEAALKNSVLR 230

  Fly   187 RQHEM-------NQR-------FAGSGRFAFRHKDSDPEIASQASVE-PIPLLGLDEDNMYSVFV 236
            :..|:       |.|       |:....|......||.:|..:.|.| .:|   ||....:||:|
 Frog   231 QMKEVDCSIRSNNSRTCQDTTDFSNDEGFTNSSMLSDMDIHVRQSEEFKLP---LDSLAKFSVWV 292

  Fly   237 TYIEIYNNSVYDLLEDSGIQKTLQSKIIR--EDANRHMFVHGVTEVEVKTVEDALEVFQMGQKRK 299
            ::.||||..:||||:.....|:.:.|.:|  .|...:.||..:..:||....:|.::..:|:|.:
 Frog   293 SFCEIYNECIYDLLDPISGDKSYKRKTLRLALDLKGYSFVKDLQWIEVSDATEACKILALGKKFQ 357

  Fly   300 RMGHTVLNAESSRSHSVFNIRLVQAPTDSQGENVVQDRQNITVSQLSLVDLAGSERSSRTKNTGV 364
            .:.:|.||:.||||||:|.:||::. .||....|::      ||:|:|.|||||||.::|:|.|.
 Frog   358 SIAYTKLNSSSSRSHSIFTVRLLKI-EDSDIPRVLK------VSELALCDLAGSERCTKTQNEGE 415

  Fly   365 RLREAGNINNSLMTLRTCLEYLRENQLAASNGLAPKKVPYRDSKITHMFKNYFDGEGQVSMIVCI 429
            ||:|:||||.||:.|..|:..|:.:|    :..|.:.||:|:||:||..:::|.|:|:|.|||.|
 Frog   416 RLKESGNINTSLLILGKCINALKTSQ----HSKAHQHVPFRESKLTHYLQSFFSGKGKVCMIVNI 476

  Fly   430 NPRIEDYDENMQVMKFAEMTQEVQIARATPMKQDLGLTPGRRKANKLFKIAVNNLNEL------- 487
            ......|||.:.|:||:.:.|:|.|..::...:    ..|:||:.:.....:||.:..       
 Frog   477 CQSASSYDETLNVLKFSAVAQKVLILESSQNSE----AYGQRKSAREVSFIINNADSKVWNSRKR 537

  Fly   488 ----------GIPE-----------------AKDLEVDVG------------------LVYSLGP 507
                      .:||                 .:|.|.|.|                  ||..|..
 Frog   538 ATVQWDSRLEDVPEDGNSEEDSEEEECLDCTYQDEEEDDGVQEDELVIKKDAYQKLLDLVEDLKT 602

  Fly   508 DFPAYEMDSPEAQIKIRELM------HYLE------QRIEKRKKLRANLDIKCDSFRQMLMNL-- 558
            .....:.|....::||||.:      |:::      :.:||.|:|   ::.:||...::..:|  
 Frog   603 KLVNEKKDKLLMELKIREEVAKEFTEHFMQREKDFSEHLEKEKEL---MEERCDERIEIFQDLVR 664

  Fly   559 -------------DRDN----------------LQLRTELASLKAVYKQERDRSAALEKKVRIHE 594
                         :|||                :.::.:||.:|   ||      |::.:|:|  
 Frog   665 KCSKSEDEGEEDENRDNTADQVEQTDTPIDGLFISMQNDLAVIK---KQ------AMDAQVQI-- 718

  Fly   595 SSIDVLNNTLSKQERQIEELTFKLNEKENMLTQKEHEKEKQKKKFSSKLAVESDKNKREFELKLR 659
            .||..:...:||.|:::::::..|::     ||:|      .||.||:|.::..|..|. .::|.
 Frog   719 ISIPDVPGIISKMEQKLKQISCDLSK-----TQEE------LKKKSSQLEIQIAKCSRA-TIQLE 771

  Fly   660 EQRVKLQERMRIKDEKLRLVSNILQSE-------DLPS--LPRSQSSENILN------------- 702
            |...||....:..|:   |||.|.|.|       ||.|  ..:.:..|..:|             
 Frog   772 ETEKKLSSNKQQIDQ---LVSMIEQKESAIDRLKDLVSHWEAKCEDYEKTVNGIKGEMIKVNTSA 833

  Fly   703 -EKDRGAYTARTEESSVPATRTDIYATPRHGAAAANNRHRRSRS--------------------- 745
             .:.|.....:..|...|:.:........|..||....|..:.|                     
 Frog   834 AGRKRPPEDHQCPEEQPPSKKEFAEVIDTHRPAALKQTHVNNNSKEPAIQQEVEGLRVETENYKT 898

  Fly   746 ------AGDKWLEHRAANPVPLGTIMQPYLKNRKSVTKLTDLKELT--AHGTTKYCLVSQDADTD 802
                  .....||.:.|......|.|:.  ||:..:::|....:.|  ..||.|  ::.|:.|  
 Frog   899 QIHNLNCSVSLLEEKLARSEEQVTEMKS--KNQTLISELQACNDRTFSLEGTVK--MLMQELD-- 957

  Fly   803 GDVETKLYKGNVIPTCGGGAQV--VFNDVECLKQKSPVHSPTRKRPSNGNISALGGGAVPSTVTS 865
               :.||...|.:      ||:  :.|.::.:.::..:.                 |......::
 Frog   958 ---QNKLNSANKV------AQIRTIQNKLDEIGKRVDIQ-----------------GKADEDFSN 996

  Fly   866 AQDVASRCN 874
            ..|:...||
 Frog   997 IHDLVEECN 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 150/457 (33%)
Kinesin 42..452 CDD:278646 150/452 (33%)
MKLP1_Arf_bdg 735..837 CDD:293148 23/132 (17%)
kif20bXP_012822228.2 Motor_domain 64..497 CDD:419868 150/457 (33%)
RBD_KIF20A-like 617..672 CDD:425378 12/57 (21%)
pneumo_PspA 728..>923 CDD:411490 41/209 (20%)
SMC_prok_B <883..1564 CDD:274008 24/155 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314538at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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