DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sqor and Aifm3

DIOPT Version :10

Sequence 1:NP_647877.1 Gene:Sqor / 38514 FlyBaseID:FBgn0035515 Length:457 Species:Drosophila melanogaster
Sequence 2:XP_006522653.1 Gene:Aifm3 / 72168 MGIID:1919418 Length:610 Species:Mus musculus


Alignment Length:404 Identity:84/404 - (20%)
Similarity:143/404 - (35%) Gaps:120/404 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VLVVGGGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSHRQMADVLPTK 110
            ||:||.|..|...|..|.....||: :||...|:|.......|    .|.||....|:|  |..|
Mouse   197 VLIVGAGAAGLVCAETLRQEGFSDR-IVLCTLDRHLPYDRAKL----SKSLDAQPEQLA--LRPK 254

  Fly   111 AKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLNYGKI---PGLVEALETPDSNVCSIY 172
             ::.:...:|...:...|:..    ::...::...|.:|.|.|:   ||     .:|.:..|   
Mouse   255 -EFFRAYGIEMLTEAQVVTVD----VRNKKVVFKDGFKLEYSKLLLAPG-----SSPKTLTC--- 306

  Fly   173 SPKYVDHVYECLRRTNKGNAIFTFP---NCPIKCAG--APQKIAYISEHYFRKMGRRDNVNIIYN 232
            ..|.|::|: .:|.....|.:....   |..:..||  ..:..||::|       :..:|:::..
Mouse   307 KGKDVENVF-TIRTPEDANRVLRLARGRNAVVVGAGFLGMEVAAYLTE-------KAHSVSVVEL 363

  Fly   233 TSLPV-IFGVKHYAEALMKLIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHV 296
            ...|. .|..:....||||:.:...:...:|..:.|:|.::.                       
Mouse   364 EETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSELRAQEG----------------------- 405

  Fly   297 TPPMSTPDVVANCKKLV-----------TPT--------------GFVDVDQLTLQHNKYSNVFA 336
                ...:||....|::           .|.              ||:.|::: :|.| ...|||
Mouse   406 ----KLQEVVLKSSKVLRADVCVLGIGAVPATGFLRQSGIGLDSRGFIPVNKM-MQTN-VPGVFA 464

  Fly   337 IGDSASSP-----NSKTA----AAAAAQSPVVFKNVMA-------------AIEGKAPTDIYDGY 379
            .||:.:.|     |.|..    ..|.||..|..:|::|             |:.||:..  |.||
Mouse   465 AGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEINTVPYLWTAMFGKSLR--YAGY 527

  Fly   380 SSCPIVTGYSSCIL 393
            ..     |:...|:
Mouse   528 GE-----GFDDVII 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SqorNP_647877.1 FadH2 65..387 CDD:440215 74/377 (20%)
Aifm3XP_006522653.1 Rieske_AIFL_N 70..163 CDD:239560
NirB 194..562 CDD:440863 84/404 (21%)
Blue background indicates that the domain is not in the aligned region.

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