DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sqor and aifm3

DIOPT Version :10

Sequence 1:NP_647877.1 Gene:Sqor / 38514 FlyBaseID:FBgn0035515 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_001121885.2 Gene:aifm3 / 100150876 ZFINID:ZDB-GENE-140619-2 Length:599 Species:Danio rerio


Alignment Length:472 Identity:103/472 - (21%)
Similarity:170/472 - (36%) Gaps:140/472 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QKLLLATHNHAPTAFSTRFLSTSRVNRERQEC-----------QVLVVGGGTGGCAMAAKLSSRL 66
            :|:::..:..|        |.|.|.::...:|           .||::|.|..|...|..|....
Zfish   161 EKVIIRANKQA--------LQTQRRSKVMSKCSAVINSSTGFSHVLIIGSGPAGLVCAETLRQEG 217

  Fly    67 GSDKVVVLEPEDKH--YYQPMFTLIGGGMKRLDQSHRQMADVLPTKAK----------WVKEKAL 119
            .:|::|:. ..|||  |.:|          :|.:|....|:.|..::.          .::::.:
Zfish   218 FTDRIVIC-TTDKHLPYDRP----------KLSKSLESTAEQLQLRSSDFFQMHDIEVLLEKEVV 271

  Fly   120 EFDPDNNTVSTSGGKTIKYDFLIIATGLQ---LNY-GKIPGLVEALETPDSNVCSIYSPKYVDHV 180
            ..|...:||:...|..::|..|.||||.:   |:| ||..|.|..|.||:.              
Zfish   272 SVDVKTHTVTFRDGFKMEYRKLFIATGSRPKPLSYKGKDVGNVFHLRTPED-------------- 322

  Fly   181 YECLRRTNKGNAIFTFPNCPIKCAGAPQKIAYISEHYFRKM-------GRRDNVNIIYNTSLPV- 237
                     .|:|.|.         |..|.|.|....|..|       .:..:|::|...::|. 
Zfish   323 ---------ANSIVTL---------ASSKNAVIIGTSFIGMEVAAALTDKAHSVSVIGIEAVPFR 369

  Fly   238 -IFGVKHYAEALMKLIKRRNITLNVQRNLVEVR-HKDNIAVFEDLAKPGVHYEETYSMLHVTPPM 300
             ..|.| ..:|||||.:...:...:...:.|:| |...:.  |.:.|.|........::.:.   
Zfish   370 KALGEK-VGKALMKLFEANRVKFYMLNEVWEMRGHNGQLK--EVVLKSGKVLRADVCVIGIG--- 428

  Fly   301 STPDVVANCKKL---VTPTGFVDVDQLTLQHNKYSNVFAIGDSASSP-----NSKTAAAAAAQSP 357
            |:| ..|..|:.   :...||:.|:: |:|.| ...|||.||..:.|     |.|........:.
Zfish   429 SSP-ATAFLKQSGVHIDSKGFIPVNK-TMQTN-IDGVFAGGDVVTFPLALRSNKKVNIPHWQMAH 490

  Fly   358 VVFKNVMAAIEGKAPTDI----------------YDGYSSCPIVTGYSSCILAEFDYNLTPVETF 406
            |..:.....|.||| :||                |.||..     |:...::..           
Zfish   491 VHGRLAALGIMGKA-SDIKTVPYFWTAMFGKSIRYAGYGD-----GFDDVVIQG----------- 538

  Fly   407 PLDQSKERYSMFFMKKE 423
            .||:.|  :..|:.|.|
Zfish   539 DLDELK--FVAFYTKSE 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SqorNP_647877.1 FadH2 65..387 CDD:440215 83/371 (22%)
aifm3NP_001121885.2 None

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