DRSC/TRiP Functional Genomics Resources

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Protein Alignment ImpL2 and dscama

DIOPT Version :9

Sequence 1:NP_728961.2 Gene:ImpL2 / 38513 FlyBaseID:FBgn0001257 Length:267 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:249 Identity:57/249 - (22%)
Similarity:94/249 - (37%) Gaps:64/249 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DSNDVDNSIEAEEEKPRNRAFEADWLKFTKTPPTKLQQAD------GATIEIVCEMMGSQVP-SI 90
            |..:....::.:.:..:|::....    .|.||. :|..:      |..:.:.|.:....:| ||
Zfish   570 DEGEYSCHVQVQPQLFKNQSVHVT----VKVPPF-IQPFEFPRYSIGHRVFVPCVVRSGDLPISI 629

  Fly    91 QWVV-GHLPRSEL----DDLD---SNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKT 147
            .|.. |....:.|    |::|   |.::     |.:.||.:.           ||||:.:..:..
Zfish   630 TWEKDGKSINASLGVTIDNIDFTSSLRI-----SNLQRVHNG-----------TYTCIAQNDAAV 678

  Fly   148 I-YASTVV--HPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHARPRAEITWLN 209
            : |.|.::  .|||.      |..|..|.           .:.|.::.|.|.....||..|.|..
Zfish   679 VKYQSQLIVRVPPRF------KVQPQDQD-----------GIYGKSVILNCSADGEPRPTIEWKY 726

  Fly   210 NENKEIVQ--------GHRHRVLANGDLLISEIKWEDMGNYKCIARNVVGKDTA 255
            ::...:.|        |.|.::|.||.|||..:..||.|.|.|...|.||.|.:
Zfish   727 SKGAGVPQFQPIALNSGFRVQLLGNGSLLIKHVLEEDAGYYLCKVSNDVGADVS 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpL2NP_728961.2 IGc2 187..251 CDD:197706 22/71 (31%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142
I-set 236..311 CDD:254352
IG_like 321..402 CDD:214653
I-set 408..502 CDD:333254
IGc2 524..579 CDD:197706 1/8 (13%)
Ig 614..679 CDD:319273 17/80 (21%)
Ig_DSCAM 708..787 CDD:143211 24/73 (33%)
Ig 805..898 CDD:325142
FN3 894..988 CDD:238020
FN3 995..1092 CDD:238020
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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