DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1299 and LPA

DIOPT Version :9

Sequence 1:NP_647862.1 Gene:CG1299 / 38496 FlyBaseID:FBgn0035501 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_005568.2 Gene:LPA / 4018 HGNCID:6667 Length:2040 Species:Homo sapiens


Alignment Length:645 Identity:163/645 - (25%)
Similarity:230/645 - (35%) Gaps:230/645 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SAVITLLPLVLLPPPTVAQFNQ----RRQVRQNCI------------------------------ 38
            |:|:| .|.|...|.|.|...|    :..|.|:|.                              
Human  1470 SSVLT-TPTVAPVPSTEAPSEQAPPEKSPVVQDCYHGDGRSYRGISSTTVTGRTCQSWSSMIPHW 1533

  Fly    39 ---TPENYYGSCVALTYCPQVVNIFQTTSRDRAQRYVIALQRSCGTRSINGDPVICCTEPRYNPV 100
               |||||..:.:...||         .:.|..:      |..|.|.    ||   |....|..:
Human  1534 HQRTPENYPNAGLTENYC---------RNPDSGK------QPWCYTT----DP---CVRWEYCNL 1576

  Fly   101 TERPRNPFFPSESTFIGPQPPPEVPDNPFLIPTPRT----------------TTTTTTT------ 143
            |:.........|:..:.|.|..|....  ..||.:|                |.:||.|      
Human  1577 TQCSETESGVLETPTVVPVPSMEAHSE--AAPTEQTPVVRQCYHGNGQSYRGTFSTTVTGRTCQS 1639

  Fly   144 -----------TPAPIPDTSAAPLIEPRGTVCRGPDTKPGNCVEIKECASLLNELRSRSQDATFA 197
                       ||...|:.....      ..||.||...|     ..|.::...:|..     :.
Human  1640 WSSMTPHRHQRTPENYPNDGLTM------NYCRNPDADTG-----PWCFTMDPSIRWE-----YC 1688

  Fly   198 NFLRASNAVCQNKGTQVCCPT------------------------GQGITNTTPAPSQ------- 231
            |..|.|:    .:||.|..||                        |:..|..|..|.|       
Human  1689 NLTRCSD----TEGTVVAPPTVIQVPSLGPPSEQDCMFGNGKGYRGKKATTVTGTPCQEWAAQEP 1749

  Fly   232 -----IVP-------------KNTD-EI---------PRRLLNVEE---------GCGSTVGYFK 259
                 .:|             :|.| :|         ||:|.:..:         .||......|
Human  1750 HRHSTFIPGTNKWAGLEKNYCRNPDGDINGPWCYTMNPRKLFDYCDIPLCASSSFDCGKPQVEPK 1814

  Fly   260 K----IVGGEVSRKGAWPWIALLGYDDPSGSPFKCGGTLITARHVLTAAHCIRQDLQ----FVRL 316
            |    ||||.|:...:|||...|  ....|..| ||||||:...|||||||:::..:    .|.|
Human  1815 KCPGSIVGGCVAHPHSWPWQVSL--RTRFGKHF-CGGTLISPEWVLTAAHCLKKSSRPSSYKVIL 1876

  Fly   317 GEHDLSTDTETGHVDINIARYVSHPDYNRRNGRSDMAILYLERNVEFTSKIAPICLP---HTANL 378
            |.|. ..:.|:...:|.::|....|.      ::|:|:|.|.|....|.|:.|.|||   :....
Human  1877 GAHQ-EVNLESHVQEIEVSRLFLEPT------QADIALLKLSRPAVITDKVMPACLPSPDYMVTA 1934

  Fly   379 RQKSYVGYMPFVAGWGKTMEGGESAQVLNELQIPIYDNKVCVQSYAKEKRYFSADQFDKAVLCAG 443
            |.:.|      :.|||:| :|.....:|.|.|:.:.:|:||     ...:|          :||.
Human  1935 RTECY------ITGWGET-QGTFGTGLLKEAQLLVIENEVC-----NHYKY----------ICAE 1977

  Fly   444 VLSGGKDTCQGDSGGPLMLPEPYQGQLRFYLIGVVSYGIGCARPNVPGVYSSTQYFMDWI 503
            .|:.|.|:|||||||||:..|    :.::.|.||.|:|:||||||.||||:....|:.||
Human  1978 HLARGTDSCQGDSGGPLVCFE----KDKYILQGVTSWGLGCARPNKPGVYARVSRFVTWI 2033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1299NP_647862.1 CLIP 37..93 CDD:197829 14/88 (16%)
CLIP 164..216 CDD:288855 13/51 (25%)
Tryp_SPc 260..503 CDD:214473 89/253 (35%)
Tryp_SPc 261..503 CDD:238113 88/248 (35%)
LPANP_005568.2 Kringle 28..105 CDD:278480
Kringle 142..219 CDD:278480
Kringle 256..333 CDD:278480
Kringle 370..447 CDD:278480
Kringle 484..561 CDD:278480
Kringle 598..675 CDD:278480
Kringle 712..789 CDD:278480
Kringle 826..903 CDD:278480
KR 938..1019 CDD:214527
Kringle 1054..1131 CDD:278480
KR 1166..1246 CDD:214527
KR 1272..1352 CDD:214527
KR 1386..1466 CDD:214527
KR 1500..1581 CDD:214527 18/102 (18%)
KR 1614..1695 CDD:214527 16/96 (17%)
Kringle 1720..1799 CDD:278480 12/78 (15%)
Tryp_SPc 1820..2034 CDD:238113 90/250 (36%)
Tryp_SPc 1820..2033 CDD:214473 88/248 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.