DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rop and scfd1

DIOPT Version :9

Sequence 1:NP_001261404.1 Gene:Rop / 38493 FlyBaseID:FBgn0004574 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_878281.1 Gene:scfd1 / 317732 ZFINID:ZDB-GENE-030116-3 Length:632 Species:Danio rerio


Alignment Length:671 Identity:137/671 - (20%)
Similarity:257/671 - (38%) Gaps:137/671 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 MNEVVKYKPPPPKKQGVTSAAGAGGMEWRVLVVDKLGMRMVSACTKMHEISAEGITLVEDINKKR 76
            :..::.:..||.|.   |:|...    |:||:.|:.|..::|....:.|:...||||...::..|
Zfish    13 LKRMLNFNAPPLKN---TTAEPV----WKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDR 70

  Fly    77 EPLPTMDAIYLITPSDESVRGLIRDFENPARPMYRYAHVFFTEVCPEELFNDLCKSC-AAGKIKT 140
            :|:|.:.|||.|.|::|::..:.:|..|   .:|...::.|..........|:..:. ||..:..
Zfish    71 DPIPDVPAIYFIMPTEENIDRICQDLRN---QLYESYYLNFISAISRSKLEDIASAALAANAVNQ 132

  Fly   141 LKEI---NIAFLPYECQVFSLDSPD----TFQCLYSPAFASIRSKHI-ERIAEQIATLCATLGEY 197
            :.::   .:.|:..|..:|.|.:.:    ::..:..|.......:.| :.|.:.:.....|||..
Zfish   133 VTKVFDQYLNFITLEDDMFILCNQNKEHISYHAINKPDIMDTDMEGIMDTIVDSLFCFFVTLGAV 197

  Fly   198 PNVRYRSDWDRNIDLAASVQQKLDAYKAD---DA--------TMGEGPEKARSQLLIL-DRGFDC 250
            |.:|....     :.|..|..|||....:   ||        |||.|....:..|.:| ||..|.
Zfish   198 PIIRCPRG-----NAAEMVAVKLDKKLRENLRDARNSLFTGDTMGTGQFSFQRPLFVLADRNLDL 257

  Fly   251 VSPLLHELTLQAMAYDLLPI-VNDV-------YRYTPGPNQPDKE----VLLDENDDLWVELRHE 303
            .:||.|..|.||:.:|:|.. :|.|       ...:|...:|.|:    ..|...|..|.:.:..
Zfish   258 ATPLHHTWTYQALIHDVLDFHLNRVSVDESHGSEASPAGARPKKKNKKSYDLTAADKFWQKHKGS 322

  Fly   304 HIAVVSTQVTQNLKKF----TDSKRM-------GSADK--SSMRD----LSQMIKKMPQYQKELS 351
            ....|:..|.:.|..:    .:.||:       |..|.  |.:.|    |:..:..:|:..::..
Zfish   323 PFPEVAEAVQEELDTYRAQEDEVKRLKSIMGLEGEDDGAISMLSDNTAKLTSAVSSLPELLEKKR 387

  Fly   352 KYSTHLHLAE---DCMKS-----YQNYVDKLCRVEQDLAMGTDAEGEKIKDHMRNIVPILLDANV 408
            ....|.::|.   |.:||     |..|.:||.             .:...|  ::::.|:.|.:.
Zfish   388 LIDLHTNVATAVLDHIKSRKLDVYFEYEEKLM-------------SKSTLD--KSLLDIISDPDA 437

  Fly   409 SN-YDKVRIIALYVMIKNGISEENLTKLFTHAQLSPKDQDMVRNLSCL---GINVIADSRKKQYS 469
            .. .||:|:..:|               :..:|..|.:.|:.:....:   |.::...:..||:.
Zfish   438 GTAEDKMRLFLIY---------------YITSQQPPSEADLEQYKKAMVDAGCDLSPLNYIKQWK 487

  Fly   470 VPRKERTTESTYQMSRWTPV----------IKDIMEDCIEDKLDLRHFP-------FLEGRAQNT 517
            ...|...|.:.|..|...|:          .:.:||......|...:.|       .:|.::.  
Zfish   488 AFTKMAATPANYGSSGVKPMGLFSRVMNTGSQFVMEGVKNLVLKQHNLPVTRILDNLMEMKSN-- 550

  Fly   518 NYHAPTSARYGHWHKDKGQAQVKNVPR-------LIVFIVGGVSMSEMRCAYEVTNAVRNWEVLV 575
                |.:..|.::.....:....::||       .|||:|||.:..|.:...:.|...:...:|.
Zfish   551 ----PETDDYRYFDPKMLRGSESSIPRNKNPFQEAIVFVVGGGNYIEYQNLVDYTKTRQGKRILY 611

  Fly   576 GSSHILSPEIFLSDLGSLSKE 596
            |.|.:.:...|:..|..|.::
Zfish   612 GCSELFNAAQFIKQLSQLGQK 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RopNP_001261404.1 Sec1 40..583 CDD:395791 128/628 (20%)
scfd1NP_878281.1 Sec1 34..619 CDD:279352 128/628 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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