DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC4 and RAD24

DIOPT Version :10

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_011100.1 Gene:RAD24 / 856920 SGDID:S000000975 Length:659 Species:Saccharomyces cerevisiae


Alignment Length:422 Identity:82/422 - (19%)
Similarity:135/422 - (31%) Gaps:148/422 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PEEPEKTA----------DDKRSHLP---------WIEKYRP----------VKFKEIVGNEDTV 37
            |..|.:.|          .|..|.||         |.||::|          .|.|::....|  
Yeast    31 PTSPVRKARSTENDFLSKQDTSSILPSINDDGGEQWYEKFKPNCLEQVAIHKRKLKDVQEALD-- 93

  Fly    38 ARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILL--------GDSYKEAVLELNASNERGID 94
               ::|........::::||.|..|:|.|:.|::||:        |.|::....|...:..|| |
Yeast    94 ---AMFLPNAKHRILLLSGPSGCSKSTVIKELSKILVPKYRQNSNGTSFRSTPNEHKVTEFRG-D 154

  Fly    95 VVRNKIKMFAQQKVTLPRGRH------KIVILDE------ADSMTEGAQQALRRTMEIYSST--- 144
            .:.|.:.........|...|:      .::::::      .|:.....|..|:   .:|||.   
Yeast   155 CIVNDLPQMESFSEFLKGARYLVMSNLSLILIEDLPNVFHIDTRRRFQQLILQ---WLYSSEPLL 216

  Fly   145 -------------------TRFALACNTSEKII----------------EPIQSRCAMLRFTKLS 174
                               .:|.:....|.:.|                .||.| ..:.:..|..
Yeast   217 PPLVICITECEIPENDNNYRKFGIDYTFSAETIMNKEILMHPRLKRIKFNPINS-TLLKKHLKFI 280

  Fly   175 DAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQ--GDMRQGLNNLQSTAQGFGDI---TAENVFKV 234
            ..|.:..|.|..||.|..      |.|.:.||  ||:|..:..||..|...|.:   |.|:... 
Yeast   281 CVQNMKMLKEKNKWNKRQ------EVIDYIAQETGDIRSAITTLQFWATSSGSLPISTRESTIS- 338

  Fly   235 CDEPHPKLLEEMIH--HCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFI 297
                :...:.::||  |...||                  .::|.|:|.....:...|..||..:
Yeast   339 ----YFHAIGKVIHGSHSTNND------------------NEMINNLFENSNNLLSKEDFKLGIL 381

  Fly   298 R--------EIGITHMKII-------DGINSL 314
            .        |..|:....|       |.:|.|
Yeast   382 ENYNTFNKGEFSISDASSIVDCLSECDNMNGL 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 77/398 (19%)
RAD24NP_011100.1 rad24 1..634 CDD:129690 82/422 (19%)

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