DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC4 and RFC1

DIOPT Version :10

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_680188.1 Gene:RFC1 / 832261 AraportID:AT5G22010 Length:956 Species:Arabidopsis thaliana


Alignment Length:257 Identity:67/257 - (26%)
Similarity:117/257 - (45%) Gaps:50/257 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PEKTADDK------RSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQ----------------- 46
            |:|....|      .:.|||.|||||....|||||:..|.:|..:.:.                 
plant   323 PKKVPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKL 387

  Fly    47 ---GNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERG---IDVVR-------N 98
               |:...::::|.||:||||:.:.::::|   .::  .:|:|||:.||   .::.:       |
plant   388 NDAGSKKAVLLSGTPGIGKTTSAKLVSQML---GFQ--AVEVNASDSRGKANSNIAKGIGGSNAN 447

  Fly    99 KIKMFAQQK---VTLPRGRH--KIVILDEADSMTEGAQQALRRTM-EIYSSTTRFALACNT--SE 155
            .:|.....:   ....|.:|  .::|:||.|.|:.|.:..:...: .|..|.......||.  |:
plant   448 SVKELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQ 512

  Fly   156 KIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ 217
            | ::.:.:.|..|.:.|.:..|:..:|:.:||.|.|...|..||.:.....||:|..:|.||
plant   513 K-LKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQ 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 64/240 (27%)
RFC1NP_680188.1 BRCT_RFC1 202..280 CDD:349383
PRK04195 340..>683 CDD:235250 64/240 (27%)
RFC1 665..827 CDD:462507
Blue background indicates that the domain is not in the aligned region.

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