Protein Alignment RfC4 and Rfc3

DIOPT Version :9

• Sequence 1: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_081285.1
• Gene: Rfc3 / 69263
• MGIID: 1916513
• Length: 356
• Species: Mus musculus
• Alignment Length: 365
• Identity: 93/365 - (25%)
• Similarity: 152/365 - (41%)
• Gaps: 75/365 - (20%)

  Fly    18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG------- 75
            |::||||.....:..:::..|:|......|:.|::::.||.|.||.|.|.|:.|.|.|
Mouse     4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKLR 68

  Fly    76 --------DSYKEAV---------LELNASNERGID--VVRNKIKMFA--QQKVTLPRGRHKIVI 119
                    .|.|:..         ||:|.|:....|  |::..:|..|  ||..|..:...|:|:
Mouse    69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVL 133

  Fly   120 LDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIE 184
            |.|.|.:|:.||.|||||||.|.||.|..|.||::.|:|.||:|||..:|....|...:.:.|..
Mouse   134 LTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLST 198

  Fly   185 VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFK---VC----------- 235
            |.:                      ::||....:.|:...:.:..|:.|   :|
Mouse   199 VCR----------------------KEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFT 241

  Fly   236 -DEPHPKLLEEMIHHCAANDI------HKAYKILAKLWKL---GYSPEDIIANIFRVCKRINIDE 290
             |:..|:...|:.....||.|      .:..::..:|::|   ...||.|:..:...... |.|.
Mouse   242 EDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLH-NCDG 305

  Fly   291 HLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
            .||.:..:.......::..|..::..|.|.:||.....:|
Mouse   306 QLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKK 345

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	92/363 (25%)
		AAA	31..165	CDD:99707	55/161 (34%)
		Rep_fac_C	254..322	CDD:285713	13/76 (17%)
Rfc3	NP_081285.1	PRK12402	3..339	CDD:237090	91/357 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820