DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RfC4 and RAD17

DIOPT Version :10

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_579917.1 Gene:RAD17 / 5884 HGNCID:9807 Length:681 Species:Homo sapiens


Alignment Length:348 Identity:70/348 - (20%)
Similarity:134/348 - (38%) Gaps:98/348 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PWIEKYRPVKFKEIVGNEDTVARLSVF---------ATQGNAPNIIIAGPPGVGKTTTIQCLAR- 71
            ||::||:|....|:..::..:..:..:         ..||.: .::|.||||.|||||::.|:: 
Human    90 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGS-ILLITGPPGCGKTTTLKILSKE 153

  Fly    72 --ILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQ------KVTLPRGR-------------- 114
              |.:.:.....:.:....:.:|:....:...||..|      |..|.|..              
Human   154 HGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRT 218

  Fly   115 -HKIVILDE------ADSMTEGAQQALRRTMEIYSSTTRF----ALACNTSEKIIEP--IQSRCA 166
             .||:::::      .||.|  ..:.||:.:.|......|    :|:.:.:::::.|  ||..|:
Human   219 DKKIILVEDLPNQFYRDSHT--LHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECS 281

  Fly   167 M--LRFTKLSDAQVLAKLIEVAKWE------KLNYTE-DGLEAIVFTAQGDMRQGLNNLQSTAQG 222
            :  :.|..::...::..|..:...|      |:...: ..||.:.....||:|..:|:||     
Human   282 ISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQ----- 341

  Fly   223 FGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIAN--------- 278
            |.....||..:    |..|.:.           .|:..:|:|. |....|:.:..|         
Human   342 FSSSKGENNLR----PRKKGMS-----------LKSDAVLSKS-KRRKKPDRVFENQEVQAIGGK 390

  Fly   279 -----IFRV------CKRINIDE 290
                 :||.      |||.::.|
Human   391 DVSLFLFRALGKILYCKRASLTE 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 70/348 (20%)
RAD17NP_579917.1 rad24 13..652 CDD:129690 70/348 (20%)
RAD1-binding motif. /evidence=ECO:0000269|PubMed:36841485 17..25
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..61
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 344..377 9/48 (19%)
Interaction with MCM7. /evidence=ECO:0000269|PubMed:15538388 432..681
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..681
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.