Protein Alignment RfC4 and Rad17

DIOPT Version :9

• Sequence 1: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_650382.3
• Gene: Rad17 / 41779
• FlyBaseID: FBgn0025808
• Length: 535
• Species: Drosophila melanogaster
• Alignment Length: 372
• Identity: 74/372 - (19%)
• Similarity: 134/372 - (36%)
• Gaps: 103/372 - (27%)

  Fly    18 WIEKYRPVKFKEI------VGN-EDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARIL-- 73
            |:|.:.|....::      ||. .|.:........:..|...::.||.|.|||||::.||:..
  Fly    89 WMESFEPATSDDLAVHPKKVGELRDWLRHCEAVRKKFPAQMCLLTGPTGAGKTTTLRVLAKEFGY 153

  Fly    74 ----------------LGD-----SYKEAVLE------LNASNERGIDVVRNKIKMFAQQKVTLP 111
                            |||     ||..:.||      |.||..:.:...:||       ::.|.
  Fly   154 QLQEWINPIDCEVVNTLGDQTTGASYVGSHLEAFKSFLLRASRYKSLLDSQNK-------RLLLV 211

  Fly   112 RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDA 176
            .....:::.|:..:..|        .:|.|::..:..|..     |:...:||...:.:....|
  Fly   212 EDFPNVLLSDKEVNFEE--------LLEEYTAYGKSPLVF-----IVADAKSRGLNISYRLFPD- 262

  Fly   177 QVLAK----------------------LIEVAKWEKLNYTEDG---LEAIVFTAQGDMRQGLNNL 216
            |:.||                      ...|.:..|..|....   :::||..||||:|..|.||
  Fly   263 QLKAKHRIEHISFNAIASTIMQKSMKTFCSVMQQNKATYKVPSTAVVDSIVVGAQGDIRNALINL 327

  Fly   217 Q-STAQGFGDITAENV-FKVCDEPHPKLLEEMIHHCAAND----IHKAYKILAKLWK----LGYS 271
            . |:.:|...:..:.: ..|..:...|.::..:.....::    :|...::|...:.    :.:|
  Fly   328 HLSSLKGVSSMPTKQLNVSVSAKGRKKKMQSTLKSIGRDESITLMHALGRVLNPKFNEDKTMLHS 392

  Fly   272 PEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIID----GINSL 314
            ||:|       .:..|.:....::|:....:.|.|.||    .||.|
  Fly   393 PEEI-------TEAFNTEPRNFVNFVYANYLPHFKEIDDVVTAINDL 432

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	74/372 (20%)
		AAA	31..165	CDD:99707	34/163 (21%)
		Rep_fac_C	254..322	CDD:285713	15/73 (21%)
Rad17	NP_650382.3	Rad17	87..455	CDD:251803	74/372 (20%)
		AAA_18	131..>165	CDD:289979	10/33 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.900