DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC4 and Gnf1

DIOPT Version :10

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_001014605.1 Gene:Gnf1 / 40607 FlyBaseID:FBgn0004913 Length:1008 Species:Drosophila melanogaster


Alignment Length:363 Identity:83/363 - (22%)
Similarity:134/363 - (36%) Gaps:116/363 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PEEPEKTADDKRSH---LPWIEKYRPVKFKEIVGNEDTVA-----RLSVFATQ------------ 46
            |..| :|||.|...   :.|::|::|...|||||.....:     .|.:.|.|            
  Fly   405 PPSP-RTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTNHNLKLKAKQERVKVLHYFNFP 468

  Fly    47 --------------GN----APN-------------IIIAGPPGVGKTTTIQCLARILLGDSYKE 80
                          ||    .||             .:::||||:|||||...:.:.|..|:   
  Fly   469 RLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDA--- 530

  Fly    81 AVLELNASNERGIDVVRNKIK----------MFAQQKVTLPRGRHKIVILDEADSMT----EGAQ 131
              :|.|||:.|...::::::.          .|..|...:.| :| ::|:||.|.|.    .|..
  Fly   531 --VEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSR-KH-VLIMDEVDGMAGNEDRGGM 591

  Fly   132 QALRRTMEIYSSTTRFALACN-TSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
            |.|  ...|..|:......|| .:...|..:.:.|..|||.:....|:..|::.:...||:..:.
  Fly   592 QEL--IALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISP 654

  Fly   196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHK--A 258
            ..:|.|:.....|:||.:|                        |..||.      |..|..:  .
  Fly   655 AKVEEIIAATNNDIRQSIN------------------------HIALLS------AKEDASQKSG 689

  Fly   259 YKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDF 296
            .::..|..|||  |.:::..:|      ..|||..:.|
  Fly   690 QQVATKDLKLG--PWEVVRKVF------TADEHKHMSF 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 77/346 (22%)
Gnf1NP_001014605.1 PTZ00121 <12..434 CDD:173412 9/29 (31%)
BRCT_RFC1 232..310 CDD:349383
PRK04195 421..969 CDD:235250 77/346 (22%)
RFC1 764..917 CDD:462507
Blue background indicates that the domain is not in the aligned region.

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