Protein Alignment RfC4 and Rfc5

DIOPT Version :9

• Sequence 1: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_001100616.1
• Gene: Rfc5 / 304528
• RGDID: 1309280
• Length: 338
• Species: Rattus norvegicus
• Alignment Length: 323
• Identity: 116/323 - (35%)
• Similarity: 186/323 - (57%)
• Gaps: 4/323 - (1%)

  Fly     2 PEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTI 66
            |.:.:..|...| :|||:|||||....:::.::|.::.:..|.::...|::::.||||.|||:||
  Rat     5 PSQQQPRAARAR-NLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 68

  Fly    67 QCLARILLGD-SYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGA 130
            ...|:.|..| .:...|||||||::||||:||..|..||..:....|| .|:|||||||:||:.|
  Rat    69 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRG-FKLVILDEADAMTQDA 132

  Fly   131 QQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
            |.||||.:|.::..|||.|.||...|||..:||||...||..|:...::.:|..|.:.|.::.:|
  Rat   133 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISE 197

  Fly   196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYK 260
            ||::|:|..:.||||:.||.||||...||.:|.|.|:.....|....:..::......|...|||
  Rat   198 DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYK 262

  Fly   261 ILAKLWKL-GYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLA 322
            .:.:|..| |.:..||:..:.....|::....:::..:.::.....::..|.:..:||::|:|
  Rat   263 NIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVGTSEKIQLSSLIA 325

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	113/309 (37%)
		AAA	31..165	CDD:99707	61/134 (46%)
		Rep_fac_C	254..322	CDD:285713	14/68 (21%)
Rfc5	NP_001100616.1	rfc	16..327	CDD:234763	114/312 (37%)
		AAA	33..174	CDD:99707	65/141 (46%)
		AAA_assoc_2	190..>218	CDD:292811	12/27 (44%)
		Rep_fac_C	256..325	CDD:285713	14/68 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.720