Protein Alignment RfC4 and Rfc3

DIOPT Version :10

• Sequence 1: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_001009629.1
• Gene: Rfc3 / 288414
• RGDID: 1306832
• Length: 356
• Species: Rattus norvegicus
• Alignment Length: 365
• Identity: 94/365 - (25%)
• Similarity: 151/365 - (41%)
• Gaps: 75/365 - (20%)

  Fly    18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG------- 75
            |::||||.....:..:::..|:|......|:.|::::.||.|.||.|.|.|:.|.|.|
  Rat     4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLR 68

  Fly    76 --------DSYKEAV---------LELNASNERGID--VVRNKIKMFA--QQKVTLPRGRHKIVI 119
                    .|.|:..         ||:|.|:....|  |::..:|..|  ||..|..:...|:|:
  Rat    69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVL 133

  Fly   120 LDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIE 184
            |.|.|.:|:.||.|||||||.|.||.|..|.||::.|:|.||:|||..:|....|...:.:.|..
  Rat   134 LTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLST 198

  Fly   185 VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFK---VC----------- 235
            |.|                      ::||......|:...:.:..|:.|   :|
  Rat   199 VCK----------------------KEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPFT 241

  Fly   236 -DEPHPKLLEEMIHHCAANDI------HKAYKILAKLWKL---GYSPEDIIANIFRVCKRINIDE 290
             |:..|:...|:.....||.|      .:..::..:|::|   ...||.|:..:...... |.|.
  Rat   242 EDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELLH-NCDG 305

  Fly   291 HLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
            .||.:..:.......::..|..::..|.|.:||.....:|
  Rat   306 QLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKK 345

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	93/363 (26%)
Rfc3	NP_001009629.1	PRK12402	3..339	CDD:237090	92/357 (26%)