Protein Alignment RfC4 and rfc3

DIOPT Version :9

• Sequence 1: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_001342879.1
• Gene: rfc3 / 2541493
• PomBaseID: SPAC27E2.10c
• Length: 342
• Species: Schizosaccharomyces pombe
• Alignment Length: 312
• Identity: 103/312 - (33%)
• Similarity: 172/312 - (55%)
• Gaps: 2/312 - (0%)

  Fly    14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSY 78
            |.|||:|||||...:::|.::|.::.|..|.:....|:::..||||.|||:||...||.:.|.:|
pombe    21 STLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNY 85

  Fly    79 KEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSS 143
            :..::|||||::||||.||.:||.||..: .:.....|::||||||:||..||.||||.:|.|:.
pombe    86 RNQLMELNASDDRGIDAVREQIKNFASTR-QIFASTFKMIILDEADAMTLAAQNALRRVIEKYTK 149

  Fly   144 TTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGD 208
            ..||.:.||...||...|||||...||..|...::...:..|.:.|..|...|...|::..::||
pombe   150 NVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGD 214

  Fly   209 MRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKL-WKLGYSP 272
            ||:.||.||:....:..|....::.....|||..::..:.....::...|:..::.: .:.|.:.
pombe   215 MRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLAL 279

  Fly   273 EDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKL 324
            :||:..||.....:.|..:.|:..:.::.....::..|.:..:||:|::|.:
pombe   280 QDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASI 331

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	102/310 (33%)
		AAA	31..165	CDD:99707	59/133 (44%)
		Rep_fac_C	254..322	CDD:285713	12/68 (18%)
rfc3	NP_001342879.1	Rad17	19..331	CDD:330523	103/310 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.710