DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC4 and rfc-1

DIOPT Version :10

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_001256606.1 Gene:rfc-1 / 179967 WormBaseID:WBGene00004337 Length:839 Species:Caenorhabditis elegans


Alignment Length:256 Identity:60/256 - (23%)
Similarity:113/256 - (44%) Gaps:55/256 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LPWIEKYRPVKFKEIV---GNEDTVARLSVFATQGNAPNI------------------------- 52
            |.|::||:|.:..|:|   |::..:.:|..:.......|:                         
 Worm   278 LSWVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQDGTSFKA 342

  Fly    53 -IIAGPPGVGKTTTIQC--LARILLGDSYKEAVLELNASNERGIDVVRNK---------IKMFAQ 105
             :::|.|||||||   |  :|...||    ..::|:|||:.|....:..|         |:.|..
 Worm   343 ALLSGSPGVGKTT---CAYMACQQLG----LQLVEMNASDVRSKKHLEAKIGELSGSHQIEQFFG 400

  Fly   106 QKVTLPRGR---HKIVILDEADSMTEGAQQA-LRRTMEIYSSTTRFALACNTSEK---IIEPIQS 163
            .|...|:..   |.|:|:||.|.|:....:| :...::|... ::..:.|..:::   .|..:.:
 Worm   401 AKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKE-SKIPIICICNDRQHPKIRTLAN 464

  Fly   164 RCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG 224
            .|..|||.|.....:.::::.:...||:...::.|:.|:..:..|:||.:.|||..::|.|
 Worm   465 YCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQMRSKGVG 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 60/256 (23%)
rfc-1NP_001256606.1 PTZ00121 <4..>245 CDD:173412
PRK04195 277..805 CDD:235250 60/256 (23%)
RFC1 597..750 CDD:462507
Blue background indicates that the domain is not in the aligned region.

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