Protein Alignment RfC4 and rfc-3

DIOPT Version :10

• Sequence 1: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Sequence 2: NP_502517.1
• Gene: rfc-3 / 178259
• WormBaseID: WBGene00004339
• Length: 354
• Species: Caenorhabditis elegans
• Alignment Length: 229
• Identity: 72/229 - (31%)
• Similarity: 116/229 - (50%)
• Gaps: 36/229 - (15%)

  Fly    18 WIEKYRPVKFKEIVGNEDT-----VARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG-- 75
            |::||||   |:::|.:..     .|....|.:....|:::..||.|.||.|.|:||.|.|.|
 Worm     4 WVDKYRP---KDLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLRELYGVG 65

  Fly    76 -------------DSYKEAVLELNASN--------ERGI---DVVRNKIKMFAQ--QKVTLPRGR 114
                         .|.|:..::..:||        :.||   .||::.:|..||  |..:..:..
 Worm    66 VEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQRS 130

  Fly   115 HKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVL 179
            .|:|:|.||||:|..||..||||||.|::..:..|:|.:..:||||:||||.::.....:|..|.
 Worm   131 FKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVT 195

  Fly   180 AKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGL 213
            ..|.:|.:.|.....|:.|:.||..::|::|:.:
 Worm   196 KVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	72/229 (31%)
rfc-3	NP_502517.1	rfc	3..>285	CDD:234763	72/229 (31%)