DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC4 and rfc-2

DIOPT Version :9

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_500069.1 Gene:rfc-2 / 176946 WormBaseID:WBGene00004338 Length:334 Species:Caenorhabditis elegans


Alignment Length:319 Identity:194/319 - (60%)
Similarity:249/319 - (78%) Gaps:4/319 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
            :|:...||:|||||....:|||||:.|.||.|...:||.|||:::||||.||||::..|||.|||
 Worm     5 EKQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLG 69

  Fly    76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEI 140
            |..||||||||||:||||||||::||.|||.|||||.|||||:|||||||||:|||||||||||:
 Worm    70 DKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEM 134

  Fly   141 YSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTA 205
            |:.|||||||||.|||||||||||||:||:||||..|:|.::.||||.||:||.:.|||||:|||
 Worm   135 YTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTA 199

  Fly   206 QGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGY 270
            ||||||.|||||:|...:..:..|||.||||||||.|:.:|:|:|......:|.||:.:..:||:
 Worm   200 QGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDRKFFEASKIIHEFHRLGF 264

  Fly   271 SPEDIIANIFRVCKRI----NIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLC 325
            |.:||::.:|||.|.:    |:.|.|::::||:|.:.||:|:.|:.|.|||:.|:|.||
 Worm   265 SSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSKLQLSRLIADLC 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 193/314 (61%)
AAA 31..165 CDD:99707 101/133 (76%)
Rep_fac_C 254..322 CDD:285713 27/71 (38%)
rfc-2NP_500069.1 PLN03025 11..325 CDD:178596 193/313 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159064
Domainoid 1 1.000 187 1.000 Domainoid score I1977
eggNOG 1 0.900 - - E1_COG0470
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6885
Inparanoid 1 1.050 399 1.000 Inparanoid score I1103
Isobase 1 0.950 - 0 Normalized mean entropy S368
OMA 1 1.010 - - QHG62156
OrthoDB 1 1.010 - - D1071197at2759
OrthoFinder 1 1.000 - - FOG0000505
OrthoInspector 1 1.000 - - oto18157
orthoMCL 1 0.900 - - OOG6_100321
Panther 1 1.100 - - LDO PTHR11669
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1090
SonicParanoid 1 1.000 - - X3447
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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