DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC4 and rfc-4

DIOPT Version :9

Sequence 1:NP_523915.1 Gene:RfC4 / 38492 FlyBaseID:FBgn0260985 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_498521.1 Gene:rfc-4 / 175976 WormBaseID:WBGene00004340 Length:334 Species:Caenorhabditis elegans


Alignment Length:336 Identity:108/336 - (32%)
Similarity:162/336 - (48%) Gaps:52/336 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQG-NAPNIIIAGPPGVGKTTTI 66
            |||.:..:.:...|.|.|||||....:|...::.|..|. .|.|| :.|:::..||||.|||:..
 Worm     2 EEPMEVDNKRPKVLTWTEKYRPKTLDDIAYQDEVVTMLK-GALQGRDLPHLLFYGPPGTGKTSAA 65

  Fly    67 QCLARILLGDS-YKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRH------KIVILDEAD 124
            ....|.|...: :.:.||:||||:||||.|||.||:.|:  |.:|.....      ||:||||.|
 Worm    66 LAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFS--KSSLGHSHREDVLKLKIIILDEVD 128

  Fly   125 SMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWE 189
            :||..||.|:||.:|.:|.||||.|.||...::|.|:.||||..||..|.....:.:|..:...|
 Worm   129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAE 193

  Fly   190 KLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQ--GFGDITAENVF-----------KVC------ 235
            ....::|.|:.::..::||:|:.:..|||.|.  ..||..|.|.:           .||      
 Worm   194 GTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNCYLRGSSDSLLISNVCKSILTA 258

  Fly   236 DEPH-PKLLEEMIHHC-AANDIHKAYKILAKLWKLGYSPEDII--------ANIFRVCKRINID- 289
            |.|. ..|.:::...| ....|.:.::.|        ..||:|        ..:...|::..:| 
 Worm   259 DVPQIIALTKDITKSCTGVAFIRRCFQQL--------MDEDVINDENIGVMGKLVATCEKRILDG 315

  Fly   290 ---EHLKLDFI 297
               |:..|||:
 Worm   316 CDLENNLLDFL 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC4NP_523915.1 PLN03025 16..330 CDD:178596 105/323 (33%)
AAA 31..165 CDD:99707 59/141 (42%)
Rep_fac_C 254..322 CDD:285713 11/56 (20%)
rfc-4NP_498521.1 44 12..329 CDD:222866 105/326 (32%)
AAA 32..169 CDD:99707 59/139 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0470
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1071197at2759
OrthoFinder 1 1.000 - - FOG0000505
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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