DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chd64 and Cnn3

DIOPT Version :10

Sequence 1:NP_647860.1 Gene:Chd64 / 38490 FlyBaseID:FBgn0035499 Length:188 Species:Drosophila melanogaster
Sequence 2:NP_062232.1 Gene:Cnn3 / 54321 RGDID:71044 Length:330 Species:Rattus norvegicus


Alignment Length:189 Identity:72/189 - (38%)
Similarity:110/189 - (58%) Gaps:9/189 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTDNFFEVLKDGVILCKLANA 68
            |:....|.:||.:.||.|||.::..::...||:.||...|.|     ||...||||:|||:|.|.
  Rat     5 NKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGMGIGT-----NFQLGLKDGIILCELINK 64

  Fly    69 LQPGSIKKINESKMAFKCMENISAFLACAKNFGVPTQETFQSVDLWERQNLNSV---VICLQSLG 130
            |||||:||:|||.:.:..:|||..|:...:.:|:...:.|::.||:|..|:..|   ::.|..|.
  Rat    65 LQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLA 129

  Fly   131 RKASNFNKPSIGPKEADKNVRNFSDEQLRAGANVISLQYGSNKGATQSGIN-FGNTRHM 188
            :.........||.|.|:|..|.|.:.:|:||.:||.||.|:||.|:|:|:. :|..||:
  Rat   130 KTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHL 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd64NP_647860.1 CH_SF 22..131 CDD:469584 42/111 (38%)
Calponin 165..188 CDD:459803 11/23 (48%)
Cnn3NP_062232.1 CH_CNN3 23..133 CDD:409133 42/114 (37%)
Calponin-like 1 164..189 12/25 (48%)
Calponin 164..188 CDD:459803 11/23 (48%)
Calponin-like 2 204..229
Calponin 204..228 CDD:459803
Calponin-like 3 243..268
Calponin 243..267 CDD:459803
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 279..330
Blue background indicates that the domain is not in the aligned region.

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